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Zfp988 zinc finger protein 988 [ Mus musculus (house mouse) ]

Gene ID: 115489950, updated on 2-Nov-2024

Summary

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Official Symbol
Zfp988provided by MGI
Official Full Name
zinc finger protein 988provided by MGI
Primary source
MGI:MGI:3651985
See related
Ensembl:ENSMUSG00000078498 AllianceGenome:MGI:3651985
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm13151
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Zfp988 in Genome Data Viewer
Location:
4 E1; 4 78.47 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (147390061..147418524)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (147305604..147334067)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene Neighboring gene predicted gene 13144 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146680009-146680309 Neighboring gene STARR-seq mESC enhancer starr_12051 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146701337-146701637 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146707438-146707739 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146708882-146709183 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146709639-146709939 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146710317-146710618 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146711266-146711567 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146711748-146712049 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146713593-146713894 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146718347-146718647 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146719638-146719939 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146732156-146732457 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146734141-146734442 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146736508-146736808 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146739365-146739666 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146751603-146751903 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146754866-146755167 Neighboring gene zinc finger protein 978 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146762351-146762652 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146764074-146764374 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146766178-146766479 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146766804-146767105 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146768262-146768563 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146769615-146769916 Neighboring gene STARR-positive B cell enhancer ABC_E3547 Neighboring gene high mobility group box 1-like pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr4:146779152-146779453 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146779533-146779834 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146779911-146780211 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146782049-146782350 Neighboring gene STARR-seq mESC enhancer starr_12053 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146793859-146794160 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146795582-146795882 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146801970-146802271 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146802879-146803179 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146803319-146803620 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146804225-146804526 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146805098-146805399 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146808010-146808311 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146808409-146808709 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146811551-146811852 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146812536-146812836 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146813710-146814011 Neighboring gene STARR-seq mESC enhancer starr_12054 Neighboring gene tousled-like kinase 2 pseudogene Neighboring gene zinc finger protein 982

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 988
Names
gastrula zinc finger protein XlCGF26.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001384232.1 → NP_001371161.1  zinc finger protein 988

    Status: VALIDATED

    Source sequence(s)
    AL606931
    UniProtKB/TrEMBL
    F6VKC7
    Related
    ENSMUSP00000120413.4, ENSMUST00000148762.4
    Conserved Domains (3) summary
    COG5048
    Location:240 → 607
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:410 → 430
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:12 → 52
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    147390061..147418524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases