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SAAL1 serum amyloid A like 1 [ Homo sapiens (human) ]

Gene ID: 113174, updated on 3-May-2020

Summary

Official Symbol
SAAL1provided by HGNC
Official Full Name
serum amyloid A like 1provided by HGNC
Primary source
HGNC:HGNC:25158
See related
Ensembl:ENSG00000166788
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPACIA1
Expression
Ubiquitous expression in testis (RPKM 8.1), lymph node (RPKM 7.2) and 25 other tissues See more
Orthologs

Genomic context

See SAAL1 in Genome Data Viewer
Location:
11p15.1
Exon count:
12
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (18080292..18106082, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (18101890..18127638, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene tryptophan hydroxylase 1 Neighboring gene uncharacterized LOC107984318 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 5 Neighboring gene serum amyloid A3, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

HIV-1 interactions

Replication interactions

Interaction Pubs
HIV-1 infection (VSV-G pseudotyped) of CEMT4 T cells downregulates plasma membrane expression of SAAL1 PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ41463

Gene Ontology Provided by GOA

Component Evidence Code Pubs
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein SAAL1
Names
synoviocyte proliferation-associated in collagen-induced arthritis 1
synoviocyte proliferation-associated in collagen-induced arthritis protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_138421.3NP_612430.2  protein SAAL1

    See identical proteins and their annotated locations for NP_612430.2

    Status: VALIDATED

    Source sequence(s)
    AC090099, BC012010, BU150462, DR155913
    Consensus CDS
    CCDS31439.1
    UniProtKB/Swiss-Prot
    Q96ER3
    UniProtKB/TrEMBL
    G1UCX3
    Related
    ENSP00000432487.1, ENST00000524803.6
    Conserved Domains (1) summary
    cd13394
    Location:92151
    Syo1_like; Fungal symportin 1 (syo1) and similar proteins

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    18080292..18106082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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