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alyref Aly/REF export factor [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112146590, updated on 15-Mar-2024

Summary

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Gene symbol
alyref
Gene description
Aly/REF export factor
See related
Ensembl:ENSOMEG00000019176
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG8
Exon count:
6
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG8 NC_050519.1 (15388647..15391581, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096082.1 (8380227..8383161)

Linkage Group LG8 - NC_050519.1Genomic Context describing neighboring genes Neighboring gene RecQ helicase-like 5 Neighboring gene uncharacterized LOC112146026 Neighboring gene cerebellar degeneration-related protein 2-like Neighboring gene Rho GDP dissociation inhibitor (GDI) alpha Neighboring gene MAPK regulated corepressor interacting protein 1 Neighboring gene protein phosphatase 1 regulatory subunit 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THO complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050519.1 Reference ASM292280v2 Primary Assembly

    Range
    15388647..15391581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024272490.1 → XP_024128258.1  THO complex subunit 4

    UniProtKB/TrEMBL
    A0A3B3CHX5
    Related
    ENSOMEP00000017483.1, ENSOMET00000026241.1
    Conserved Domains (1) summary
    cd12680
    Location:118 → 191
    RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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