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alyref Aly/REF export factor [ Danio rerio (zebrafish) ]

Gene ID: 560127, updated on 24-Apr-2022

Summary

Official Symbol
alyrefprovided by ZNC
Official Full Name
Aly/REF export factorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070928-29
See related
Ensembl:ENSDARG00000077732 AllianceGenome:ZFIN:ZDB-GENE-070928-29
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tho4; thoc4; zgc:171753
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human ALYREF (Aly/REF export factor). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See alyref in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (59880208..59890529)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (59589107..59599428)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (60286648..60296969)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 27a Neighboring gene MAPK regulated corepressor interacting protein 1 Neighboring gene Rho GDP dissociation inhibitor (GDI) alpha Neighboring gene cerebellar degeneration-related protein 2-like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Clone Names

  • MGC171753

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
THO complex subunit 4
Names
THO complex 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105108.1NP_001098578.1  THO complex subunit 4

    See identical proteins and their annotated locations for NP_001098578.1

    Status: PROVISIONAL

    Source sequence(s)
    BC151964
    UniProtKB/TrEMBL
    A7MBY2
    Related
    ENSDARP00000103201.1, ENSDART00000108647.4
    Conserved Domains (2) summary
    COG0724
    Location:126226
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12680
    Location:126199
    RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    59880208..59890529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)