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RRP1 ribosomal RNA processing 1 [ Sus scrofa (pig) ]

Gene ID: 110256501, updated on 15-Mar-2024

Summary

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Official Symbol
RRP1provided by VGNC
Official Full Name
ribosomal RNA processing 1provided by VGNC
Primary source
VGNC:VGNC:92464
See related
Ensembl:ENSSSCG00000037061
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 23.0), spleen (RPKM 12.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (206722591..206736000)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene pyridoxal kinase Neighboring gene cystatin B Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 3 Neighboring gene trafficking protein particle complex subunit 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010455.5 Chromosome 13 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosomal RNA processing protein 1 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    206722591..206736000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021071076.1 → XP_020926735.1  ribosomal RNA processing protein 1 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A287APE0, A0A8D1HMN3, A0A8D1RD55
    Related
    ENSSSCP00000045889.1, ENSSSCT00000044042.3
    Conserved Domains (1) summary
    pfam05997
    Location:11 → 219
    Nop52; Nucleolar protein,Nop52

  2. XM_021071077.1 → XP_020926736.1  ribosomal RNA processing protein 1 homolog A isoform X2

    Conserved Domains (1) summary
    pfam05997
    Location:1 → 117
    Nop52; Nucleolar protein,Nop52
Nucleotide Protein
Heading Accession and Version

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