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LOC105044608 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 [ Elaeis guineensis (African oil palm) ]

Gene ID: 105044608, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105044608
Gene description
carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Elaeis guineensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
102 current EG5 (GCF_000442705.1) 5 NC_025997.1 (4284527..4290626, complement)

Chromosome 5 - NC_025997.1Genomic Context describing neighboring genes Neighboring gene putative serine/threonine-protein kinase-like protein CCR3 Neighboring gene uncharacterized LOC105044609 Neighboring gene 60S ribosomal protein L13a-4 Neighboring gene dnaJ protein homolog 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025997.1 Chromosome 5 Reference EG5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoprotein phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Elaeis guineensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EG5 Primary Assembly

Genomic

  1. NC_025997.1 Reference EG5 Primary Assembly

    Range
    4284527..4290626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010922558.3 → XP_010920860.2  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1

    UniProtKB/TrEMBL
    A0A6I9RBX5
    Conserved Domains (2) summary
    cd00051
    Location:18 → 77
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl21460
    Location:92 → 266
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
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