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boc BOC cell adhesion associated, oncogene regulated [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104955924, updated on 12-Mar-2024

Summary

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Gene symbol
boc
Gene description
BOC cell adhesion associated, oncogene regulated
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011357760.1 (18355..27677, complement)

NW_011357760.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 50, NatE catalytic subunit Neighboring gene upstream transcription factor family member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011357760.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brother of CDO

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011357760.1 Reference NC01 Primary Assembly

    Range
    18355..27677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010783323.1 → XP_010781625.1  brother of CDO

    UniProtKB/TrEMBL
    A0A6I9P2E5
    Conserved Domains (4) summary
    smart00410
    Location:129 → 207
    IG_like; Immunoglobulin like
    cd00063
    Location:470 → 565
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:215 → 299
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:225 → 298
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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