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Nxf1 nuclear RNA export factor 1 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104868272, updated on 12-Mar-2024

Summary

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Gene symbol
Nxf1
Gene description
nuclear RNA export factor 1
Locus tag
H920_09037
See related
Ensembl:ENSFDAG00000011867
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900939.1 (227348..243188)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011045200.1 (231177..247006)

NW_022900939.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 74 Neighboring gene uncharacterized LOC104868269 Neighboring gene testis-expressed protein 54-like Neighboring gene syntaxin 5 Neighboring gene transmembrane protein 223 Neighboring gene transmembrane protein 179B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear RNA export factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900939.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    227348..243188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010632971.3 → XP_010631273.1  nuclear RNA export factor 1

    UniProtKB/TrEMBL
    A0A091DGL6
    Related
    ENSFDAP00000002048.1
    Conserved Domains (6) summary
    smart00804
    Location:555 → 617
    TAP_C; C-terminal domain of vertebrate Tap protein
    cd00780
    Location:381 → 537
    NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
    sd00035
    Location:223 → 265
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:115 → 197
    Tap-RNA_bind; Tap, RNA-binding
    pfam12799
    Location:290 → 328
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:264 → 324
    LRR_8; Leucine rich repeat
Nucleotide Protein
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