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ATF1 activating transcription factor 1 [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103894915, updated on 3-Aug-2024

Summary

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Gene symbol
ATF1
Gene description
activating transcription factor 1
Locus tag
AS27_13218
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008794786.1 (224572..240857, complement)

NW_008794786.1Genomic Context describing neighboring genes Neighboring gene sodium voltage-gated channel alpha subunit 8 Neighboring gene transmembrane serine protease 12 Neighboring gene thiol methyltransferase 1A Neighboring gene disco interacting protein 2 homolog B Neighboring gene La ribonucleoprotein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008794786.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ATF4-CREB1 transcription factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-1
Names
Cyclic AMP-dependent transcription factor ATF-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008794786.1 Reference ASM69914v1

    Range
    224572..240857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009274396.2 → XP_009272671.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    See identical proteins and their annotated locations for XP_009272671.1

    Conserved Domains (2) summary
    cd14690
    Location:225 → 279
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:65 → 95
    pKID; pKID domain

  2. XM_009274393.2 → XP_009272668.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    See identical proteins and their annotated locations for XP_009272668.1

    UniProtKB/TrEMBL
    A0A087QSQ3
    Conserved Domains (2) summary
    cd14690
    Location:262 → 316
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:102 → 132
    pKID; pKID domain

  3. XM_019470791.1 → XP_019326336.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

Nucleotide Protein
Heading Accession and Version

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