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Zbtb6 zinc finger and BTB domain containing 6 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103726754, updated on 11-Mar-2024

Summary

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Gene symbol
Zbtb6
Gene description
zinc finger and BTB domain containing 6
See related
Ensembl:ENSNGAG00000021046
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008331486.1 (808378..813403, complement)

NW_008331486.1Genomic Context describing neighboring genes Neighboring gene phosducin like Neighboring gene ring finger and CCCH-type domains 2 Neighboring gene small nucleolar RNA SNORD90 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene RAB GTPase activating protein 1 Neighboring gene nucleoporin Nup37 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008331486 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008331486.1 Reference S.galili_v1.0 Primary Assembly

    Range
    808378..813403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008824402.3 → XP_008822624.1  zinc finger and BTB domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8C6RS27
    Related
    ENSNGAP00000022041.1, ENSNGAT00000027723.1
    Conserved Domains (4) summary
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:325 → 347
    zf-C2H2; Zinc finger, C2H2 type
    cd18197
    Location:8 → 123
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam13465
    Location:339 → 363
    zf-H2C2_2; Zinc-finger double domain

  2. XM_008824401.3 → XP_008822623.1  zinc finger and BTB domain-containing protein 6 isoform X1

    Conserved Domains (4) summary
    sd00017
    Location:334 → 354
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:332 → 354
    zf-C2H2; Zinc finger, C2H2 type
    cd18197
    Location:15 → 130
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam13465
    Location:346 → 370
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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