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PAX5 paired box 5 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103069545, updated on 11-Mar-2024

Summary

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Gene symbol
PAX5
Gene description
paired box 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006783413.1 (1803800..1992531, complement)

NW_006783413.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L7-like 1 pseudogene Neighboring gene maternal embryonic leucine zipper kinase Neighboring gene zinc finger CCHC-type containing 7 Neighboring gene 60S ribosomal protein L23a-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006783413 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box protein Pax-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006783413.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    1803800..1992531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007456001.1 → XP_007456063.1  paired box protein Pax-5

    See identical proteins and their annotated locations for XP_007456063.1

    UniProtKB/TrEMBL
    A0A340X3C8
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

  2. XM_007456000.1 → XP_007456062.1  paired box protein Pax-5

    UniProtKB/TrEMBL
    A0A340X7R3
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

  3. XM_007455998.1 → XP_007456060.1  paired box protein Pax-5

    UniProtKB/TrEMBL
    A0A340XAM1
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 355
    Pax2_C; Paired-box protein 2 C terminal

  4. XM_007455997.1 → XP_007456059.1  paired box protein Pax-5

    UniProtKB/TrEMBL
    A0A340XA51
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 341
    Pax2_C; Paired-box protein 2 C terminal

  5. XM_007455995.1 → XP_007456057.1  paired box protein Pax-5

    UniProtKB/TrEMBL
    A0A340X7Q8
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:285 → 389
    Pax2_C; Paired-box protein 2 C terminal

  6. XM_007456002.1 → XP_007456064.1  paired box protein Pax-5

    UniProtKB/TrEMBL
    A0A340XA56
    Conserved Domains (2) summary
    pfam12403
    Location:219 → 289
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:16 → 80
    HTH; Helix-turn-helix domains

  7. XM_007455999.1 → XP_007456061.1  paired box protein Pax-5

    UniProtKB/TrEMBL
    A0A340X418
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:242 → 346
    Pax2_C; Paired-box protein 2 C terminal

  8. XM_007455996.1 → XP_007456058.1  paired box protein Pax-5

    UniProtKB/TrEMBL
    A0A340X3C4
    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:284 → 388
    Pax2_C; Paired-box protein 2 C terminal
Nucleotide Protein
Heading Accession and Version

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