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NFYA nuclear transcription factor Y subunit alpha [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102947162, updated on 10-Mar-2024

Summary

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Gene symbol
NFYA
Gene description
nuclear transcription factor Y subunit alpha
Locus tag
UY3_10569
See related
EnsemblRapid:ENSCMYG00015001679
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See NFYA in Genome Data Viewer
Location:
chromosome: 21
Exon count:
14
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 21 NC_051261.2 (9702573..9723694, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 24 NC_051264.1 (9131400..9152337)

Chromosome 21 - NC_051261.2Genomic Context describing neighboring genes Neighboring gene triggering receptor expressed on myeloid cells like 1 Neighboring gene adenylate cyclase type 10 Neighboring gene O-acyl-ADP-ribose deacylase 1 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 2 Neighboring gene translocator protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051261.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    9702573..9723694 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043533599.1 → XP_043389534.1  nuclear transcription factor Y subunit alpha isoform X10

    Conserved Domains (1) summary
    pfam02045
    Location:228 → 283
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  2. XM_037885298.2 → XP_037741226.1  nuclear transcription factor Y subunit alpha isoform X15

    Related
    ENSCMYP00015002607.1, ENSCMYT00015003120.1
    Conserved Domains (1) summary
    pfam02045
    Location:190 → 245
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  3. XM_037885293.2 → XP_037741221.1  nuclear transcription factor Y subunit alpha isoform X9

    UniProtKB/TrEMBL
    M7BW76
    Related
    ENSCMYP00015002604.1, ENSCMYT00015003117.1
    Conserved Domains (1) summary
    pfam02045
    Location:234 → 289
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  4. XM_043533597.1 → XP_043389532.1  nuclear transcription factor Y subunit alpha isoform X8

    Conserved Domains (1) summary
    smart00521
    Location:253 → 312
    CBF; CCAAT-Binding transcription Factor

  5. XM_037885290.2 → XP_037741218.1  nuclear transcription factor Y subunit alpha isoform X4

    Conserved Domains (1) summary
    pfam02045
    Location:261 → 316
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  6. XM_043533601.1 → XP_043389536.1  nuclear transcription factor Y subunit alpha isoform X12

    Conserved Domains (1) summary
    smart00521
    Location:216 → 275
    CBF; CCAAT-Binding transcription Factor

  7. XM_043533596.1 → XP_043389531.1  nuclear transcription factor Y subunit alpha isoform X7

    Conserved Domains (1) summary
    smart00521
    Location:254 → 313
    CBF; CCAAT-Binding transcription Factor

  8. XM_037885288.2 → XP_037741216.1  nuclear transcription factor Y subunit alpha isoform X3

    Conserved Domains (1) summary
    pfam02045
    Location:262 → 317
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  9. XM_037885287.2 → XP_037741215.1  nuclear transcription factor Y subunit alpha isoform X2

    Related
    ENSCMYP00015002598.1, ENSCMYT00015003111.1
    Conserved Domains (1) summary
    pfam02045
    Location:262 → 317
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  10. XM_037885297.2 → XP_037741225.1  nuclear transcription factor Y subunit alpha isoform X14

    Conserved Domains (1) summary
    pfam02045
    Location:213 → 268
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  11. XM_037885296.2 → XP_037741224.1  nuclear transcription factor Y subunit alpha isoform X13

    Conserved Domains (1) summary
    pfam02045
    Location:217 → 272
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  12. XM_037885295.2 → XP_037741223.1  nuclear transcription factor Y subunit alpha isoform X11

    Conserved Domains (1) summary
    pfam02045
    Location:219 → 274
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  13. XM_037885292.2 → XP_037741220.1  nuclear transcription factor Y subunit alpha isoform X6

    Conserved Domains (1) summary
    pfam02045
    Location:257 → 312
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  14. XM_037885291.2 → XP_037741219.1  nuclear transcription factor Y subunit alpha isoform X5

    Conserved Domains (1) summary
    pfam02045
    Location:261 → 316
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  15. XM_037885286.2 → XP_037741214.1  nuclear transcription factor Y subunit alpha isoform X1

    Conserved Domains (1) summary
    pfam02045
    Location:263 → 318
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  16. XM_043533595.1 → XP_043389530.1  nuclear transcription factor Y subunit alpha isoform X3

    Conserved Domains (1) summary
    pfam02045
    Location:262 → 317
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  17. XM_027825942.3 → XP_027681743.1  nuclear transcription factor Y subunit alpha isoform X1

    Conserved Domains (1) summary
    pfam02045
    Location:263 → 318
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  18. XM_043533598.1 → XP_043389533.1  nuclear transcription factor Y subunit alpha isoform X9

    UniProtKB/TrEMBL
    M7BW76
    Conserved Domains (1) summary
    pfam02045
    Location:234 → 289
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  19. XM_043533600.1 → XP_043389535.1  nuclear transcription factor Y subunit alpha isoform X10

    Conserved Domains (1) summary
    pfam02045
    Location:228 → 283
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  20. XM_007063515.3 → XP_007063577.1  nuclear transcription factor Y subunit alpha isoform X9

    See identical proteins and their annotated locations for XP_007063577.1

    UniProtKB/TrEMBL
    M7BW76
    Conserved Domains (1) summary
    pfam02045
    Location:234 → 289
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  21. XM_007063512.3 → XP_007063574.1  nuclear transcription factor Y subunit alpha isoform X3

    Conserved Domains (1) summary
    pfam02045
    Location:262 → 317
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  22. XM_007063513.3 → XP_007063575.1  nuclear transcription factor Y subunit alpha isoform X1

    Related
    ENSCMYP00015002593.1, ENSCMYT00015003106.1
    Conserved Domains (1) summary
    pfam02045
    Location:263 → 318
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  23. XM_027825943.3 → XP_027681744.1  nuclear transcription factor Y subunit alpha isoform X1

    Conserved Domains (1) summary
    pfam02045
    Location:263 → 318
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  24. XM_037885289.2 → XP_037741217.1  nuclear transcription factor Y subunit alpha isoform X3

    Conserved Domains (1) summary
    pfam02045
    Location:262 → 317
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Nucleotide Protein
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