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SORBS2 sorbin and SH3 domain containing 2 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102483319, updated on 10-Mar-2024

Summary

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Gene symbol
SORBS2
Gene description
sorbin and SH3 domain containing 2
Locus tag
TREES_T100012410
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006160208.1 (3030290..3307936, complement)

NW_006160208.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 110 Neighboring gene PDZ and LIM domain 3 Neighboring gene uncharacterized LOC102484256 Neighboring gene uncharacterized LOC114010021 Neighboring gene uncharacterized LOC102484969 Neighboring gene toll like receptor 3 Neighboring gene family with sequence similarity 149 member A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006160208 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Yan H, et al. Elife, 2012 Nov 13. PMID 23150796, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorbin and SH3 domain-containing protein 2
Names
Sorbin and SH3 domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006160208.1 Reference TupChi_1.0

    Range
    3030290..3307936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027776584.1 → XP_027632385.1  sorbin and SH3 domain-containing protein 2 isoform X1

  2. XM_014592382.2 → XP_014447868.1  sorbin and SH3 domain-containing protein 2 isoform X3

    Conserved Domains (3) summary
    smart00459
    Location:163 → 213
    Sorb; Sorbin homologous domain
    cd11923
    Location:582 → 638
    SH3_Sorbs2_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)
    cl17036
    Location:507 → 561
    SH3; Src Homology 3 domain superfamily

  3. XM_027776585.1 → XP_027632386.1  sorbin and SH3 domain-containing protein 2 isoform X2

  4. XM_027776586.1 → XP_027632387.1  sorbin and SH3 domain-containing protein 2 isoform X6

  5. XM_006160463.3 → XP_006160525.1  sorbin and SH3 domain-containing protein 2 isoform X5

    Conserved Domains (4) summary
    cd11917
    Location:960 → 1020
    SH3_Sorbs2_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)
    cd11923
    Location:861 → 917
    SH3_Sorbs2_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)
    cl02617
    Location:4 → 32
    Sorb; Sorbin homologous domain
    cl17036
    Location:786 → 840
    SH3; Src Homology 3 domain superfamily

  6. XM_006160464.3 → XP_006160526.1  sorbin and SH3 domain-containing protein 2 isoform X4

    Conserved Domains (3) summary
    cd11923
    Location:333 → 389
    SH3_Sorbs2_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)
    cl02617
    Location:4 → 32
    Sorb; Sorbin homologous domain
    cl17036
    Location:432 → 492
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
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