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PLAT plasminogen activator, tissue type [ Bubalus bubalis (water buffalo) ]

Gene ID: 102398577, updated on 10-Mar-2024

Summary

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Gene symbol
PLAT
Gene description
plasminogen activator, tissue type
See related
EnsemblRapid:ENSBALG00030000631
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 1 NC_059157.1 (8551647..8575757)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 1 NC_058343.1 (8536903..8561006)

Chromosome 1 - NC_059157.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase beta Neighboring gene inhibitor of nuclear factor kappa B kinase subunit beta Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene adaptor related protein complex 3 subunit mu 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in plasminogen activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in smooth muscle cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tissue-type plasminogen activator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059157.1 Reference NDDB_SH_1 Primary Assembly

    Range
    8551647..8575757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006075707.4 → XP_006075769.3  tissue-type plasminogen activator

    Related
    ENSBALP00030001063.1, ENSBALT00030001699.1
    Conserved Domains (4) summary
    smart00058
    Location:42 → 84
    FN1; Fibronectin type 1 domain
    smart00130
    Location:128 → 210
    KR; Kringle domain
    cd00108
    Location:216 → 300
    KR; Kringle domain; Kringle domains are believed to play a role in binding mediators, such as peptides, other proteins, membranes, or phospholipids. They are autonomous structural domains, found in a varying number of copies, in blood clotting and ...
    cd00190
    Location:317 → 563
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
Nucleotide Protein
Heading Accession and Version

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