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RARS1 arginyl-tRNA synthetase 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102385724, updated on 10-Mar-2024

Summary

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Gene symbol
RARS1
Gene description
arginyl-tRNA synthetase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
RARS
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841843.1 (5163112..5201283)

NW_005841843.1Genomic Context describing neighboring genes Neighboring gene teneurin-2 Neighboring gene uncharacterized LOC112550488 Neighboring gene rho GTPase-activating protein 7-like Neighboring gene WW and C2 domain containing 1 Neighboring gene pantothenate kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841843 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables arginine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arginyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arginine--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841843.1 Reference ASM45574v1 Primary Assembly

    Range
    5163112..5201283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014520778.2 → XP_014376264.1  arginine--tRNA ligase, cytoplasmic isoform X2

    UniProtKB/TrEMBL
    A0A1U8DEY3
    Conserved Domains (4) summary
    cd00671
    Location:122 → 386
    ArgRS_core; catalytic core domain of arginyl-tRNA synthetases
    smart01016
    Location:7 → 95
    Arg_tRNA_synt_N; Arginyl tRNA synthetase N terminal dom
    PLN02286
    Location:8 → 589
    PLN02286; arginine-tRNA ligase
    cl12020
    Location:427 → 589
    Anticodon_Ia_like; Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains

  2. XM_014520781.2 → XP_014376267.1  arginine--tRNA ligase, cytoplasmic isoform X2

    UniProtKB/TrEMBL
    A0A1U8DEY3
    Conserved Domains (4) summary
    cd00671
    Location:122 → 386
    ArgRS_core; catalytic core domain of arginyl-tRNA synthetases
    smart01016
    Location:7 → 95
    Arg_tRNA_synt_N; Arginyl tRNA synthetase N terminal dom
    PLN02286
    Location:8 → 589
    PLN02286; arginine-tRNA ligase
    cl12020
    Location:427 → 589
    Anticodon_Ia_like; Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains

  3. XM_006015704.3 → XP_006015766.1  arginine--tRNA ligase, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    A0A1U7RCW3
    Conserved Domains (4) summary
    cd00671
    Location:183 → 447
    ArgRS_core; catalytic core domain of arginyl-tRNA synthetases
    smart01016
    Location:68 → 156
    Arg_tRNA_synt_N; Arginyl tRNA synthetase N terminal dom
    PLN02286
    Location:69 → 650
    PLN02286; arginine-tRNA ligase
    cl12020
    Location:488 → 650
    Anticodon_Ia_like; Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains
Nucleotide Protein
Heading Accession and Version

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