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ASM45574v1

Organism name:
Alligator sinensis (Chinese alligator)
Sex:
male
BioSample:
SAMN02981559
BioProject:
PRJNA215016
Submitter:
BGI-shenzhen
Date:
2013/08/29
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000455745.1 (latest)
RefSeq assembly accession:
GCF_000455745.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AVPB01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
109x
Sequencing technology:
Illumina GA II

IDs: 57741 [UID] 773338 [GenBank] 849688 [RefSeq]

See Genome Information for Alligator sinensis

History (Show revision history)

Global statistics

Total sequence length2,270,567,745
Total ungapped length2,198,602,449
Gaps between scaffolds0
Number of scaffolds9,317
Scaffold N502,188,296
Scaffold L50325
Number of contigs177,282
Contig N5023,412
Contig L5028,841
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)177,282

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,270,550,9999,3162,198,585,7032,188,296167,9650
MoleculeTotal
Length
Mitochondrion MT16,746
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