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ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102299572, updated on 10-Mar-2024

Summary

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Gene symbol
ddx27
Gene description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
See related
Ensembl:ENSHBUG00000008119
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582936.1 (269100..277555, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179992.1 (258412..267240, complement)

NW_024582936.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily KQT member 2 Neighboring gene cathepsin A Neighboring gene phospholipid transfer protein Neighboring gene ketohexokinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX27
Names
DEAD-box helicase 27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582936.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    269100..277555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005948165.3 → XP_005948227.1  probable ATP-dependent RNA helicase DDX27 isoform X2

    See identical proteins and their annotated locations for XP_005948227.1

    UniProtKB/TrEMBL
    A0A3Q2V7K4
    Related
    ENSHBUP00000006654.1
    Conserved Domains (3) summary
    COG0513
    Location:186 → 657
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00268
    Location:187 → 391
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:416 → 525
    Helicase_C; Helicase conserved C-terminal domain

  2. XM_005948164.3 → XP_005948226.1  probable ATP-dependent RNA helicase DDX27 isoform X1

    See identical proteins and their annotated locations for XP_005948226.1

    UniProtKB/TrEMBL
    A0A3Q2V7K4, A0A3Q2VFR1
    Related
    ENSHBUP00000006673.1
    Conserved Domains (3) summary
    COG0513
    Location:186 → 657
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00268
    Location:187 → 391
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:416 → 525
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
Heading Accession and Version

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