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znf384b zinc finger protein 384 b [ Pundamilia nyererei ]

Gene ID: 102211672, updated on 10-Mar-2024

Summary

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Gene symbol
znf384b
Gene description
zinc finger protein 384 b
See related
Ensembl:ENSPNYG00000022622
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187446.1 (838254..848843, complement)

NW_005187446.1Genomic Context describing neighboring genes Neighboring gene discoidin domain receptor tyrosine kinase 1 Neighboring gene guanine nucleotide binding protein-like 1 Neighboring gene uncharacterized LOC102212330 Neighboring gene COP9 constitutive photomorphogenic homolog subunit 7A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187446.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 384-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187446.1 Reference PunNye1.0

    Range
    838254..848843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005731867.1 → XP_005731924.1  zinc finger protein 384-like isoform X2

    UniProtKB/TrEMBL
    A0A3B4H6F4, A0A9Y3VCI1
    Conserved Domains (4) summary
    COG5048
    Location:223 → 348
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:229 → 249
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:227 → 249
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:241 → 266
    zf-H2C2_2; Zinc-finger double domain

  2. XM_005731865.1 → XP_005731922.1  zinc finger protein 384-like isoform X1

    See identical proteins and their annotated locations for XP_005731922.1

    UniProtKB/TrEMBL
    A0A3B4H6F4, A0A9Y6JA40
    Related
    ENSPNYP00000030004.1, ENSPNYT00000030736.1
    Conserved Domains (3) summary
    COG5048
    Location:272 → 423
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:304 → 324
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:316 → 341
    zf-H2C2_2; Zinc-finger double domain

  3. XM_013910555.1 → XP_013766009.1  zinc finger protein 384-like isoform X1

    UniProtKB/TrEMBL
    A0A3B4H6F4, A0A9Y6JA40
    Conserved Domains (3) summary
    COG5048
    Location:272 → 423
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:304 → 324
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:316 → 341
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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