LOC102151523 vacuolar protein sorting-associated protein 26A-like [Canis lupus familiaris (dog)] - Gene

Summary

Gene symbol: LOC102151523
Gene description: vacuolar protein sorting-associated protein 26A-like
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

Location:: chromosome: 24

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	24	NC_051828.1 (20169763..20192909)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	24	NC_006606.4 (19193937..19213990)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	24	NC_049245.1 (19985010..20005064)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	24	NC_049284.1 (19443512..19463545)

Chromosome 24 - NC_051828.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in intracellular protein transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in retrograde transport, endosome to Golgi	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in endosome	IEA Inferred from Electronic Annotation more info	PubMed
part_of retromer complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 26A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051828.1 Reference ROS_Cfam_1.0

Range

20169763..20192909

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038432911.1 → XP_038288839.1 LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 26A-like isoform X1

Conserved Domains (3) summary

pfam03643
Location:128 → 405

Vps26; Vacuolar protein sorting-associated protein 26

cd00096
Location:46 → 49

Ig; Ig strand C' [structural motif]

cl11960
Location:40 → 112

Ig; Immunoglobulin domain

Alternate UMICH_Zoey_3.1

Genomic

NC_049284.1 Alternate UMICH_Zoey_3.1

Range

19443512..19463545

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038509601.1 → XP_038365529.1 LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 26A-like isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049245.1 Alternate UU_Cfam_GSD_1.0

Range

19985010..20005064

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038572985.1 → XP_038428913.1 LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 26A-like isoform X3

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006606.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

19193937..19213990

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038457811.1 → XP_038313739.1 LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 26A-like isoform X4

Conserved Domains (3) summary

pfam03643
Location:123 → 399

Vps26; Vacuolar protein sorting-associated protein 26

cd00096
Location:9 → 17

Ig; Ig strand B [structural motif]

cl11960
Location:4 → 96

Ig; Immunoglobulin domain