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Vps25 vacuolar protein sorting 25 homolog [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101971299, updated on 8-Mar-2024

Summary

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Gene symbol
Vps25
Gene description
vacuolar protein sorting 25 homolog
Locus tag
H1C71_021829
See related
EnsemblRapid:ENSSTOG00015022290
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405602.1 (19583447..19589169, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936490.1 (17486009..17491692)

NW_024405602.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly factor 3 homolog, mitochondrial Neighboring gene WNK lysine deficient protein kinase 4 Neighboring gene receptor activity modifying protein 2 Neighboring gene enhancer of zeste 1 polycomb repressive complex 2 subunit Neighboring gene U5 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT II complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein-sorting-associated protein 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405602.1 Reference HiC_Itri_2 Primary Assembly

    Range
    19583447..19589169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005321893.4 → XP_005321950.1  vacuolar protein-sorting-associated protein 25 isoform X2

    UniProtKB/TrEMBL
    I3M302
    Related
    ENSSTOP00015027538.1, ENSSTOT00015029931.1
    Conserved Domains (1) summary
    pfam05871
    Location:10 → 139
    ESCRT-II; ESCRT-II complex subunit

  2. XM_021724257.2 → XP_021579932.1  vacuolar protein-sorting-associated protein 25 isoform X3

    UniProtKB/TrEMBL
    A0A287CUI9
    Conserved Domains (1) summary
    pfam05871
    Location:10 → 139
    ESCRT-II; ESCRT-II complex subunit

  3. XM_021724256.2 → XP_021579931.1  vacuolar protein-sorting-associated protein 25 isoform X1

    UniProtKB/TrEMBL
    A0A287D6F5
    Conserved Domains (1) summary
    pfam05871
    Location:10 → 139
    ESCRT-II; ESCRT-II complex subunit
Nucleotide Protein
Heading Accession and Version

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