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Slc18a1 solute carrier family 18 member A1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101842431, updated on 8-Mar-2024

Summary

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Gene symbol
Slc18a1
Gene description
solute carrier family 18 member A1
See related
EnsemblRapid:ENSMAUG00000018163
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Slc18a1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429185.1 (5111979..5155603)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801656.1 (12447616..12473612, complement)

NW_024429185.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121139138 Neighboring gene leucine zipper tumor suppressor 1 Neighboring gene ATPase H+ transporting V1 subunit B2 Neighboring gene uncharacterized LOC121139168 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene lipoprotein lipase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serotonin:sodium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xenobiotic transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aminergic neurotransmitter loading into synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xenobiotic transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in terminal bouton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromaffin granule amine transporter
Names
solute carrier family 18 (vesicular monoamine), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429185.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    5111979..5155603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040742204.1 → XP_040598138.1  chromaffin granule amine transporter

    UniProtKB/TrEMBL
    A0A1U8CA09
    Related
    ENSMAUP00000020044.1, ENSMAUT00000024029.2
    Conserved Domains (1) summary
    cd17384
    Location:127 → 475
    MFS_SLC18A1_2_VAT1_2; Vesicular amine transporters 1 (VAT1) and 2 (VAT2), and similar transporters of the Major Facilitator Superfamily
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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