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Triobp TRIO and F-actin binding protein [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101717848, updated on 8-Mar-2024

Summary

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Gene symbol
Triobp
Gene description
TRIO and F-actin binding protein
See related
Ensembl:ENSHGLG00000014133
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Triobp in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624752.1 (10130857..10186242, complement)

NW_004624752.1Genomic Context describing neighboring genes Neighboring gene histone H1.0 Neighboring gene glycine C-acetyltransferase Neighboring gene nucleolar protein 12 Neighboring gene syncytin-2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624752 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TRIO and F-actin-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624752.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    10130857..10186242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021259023.1 → XP_021114682.1  TRIO and F-actin-binding protein isoform X4

    Conserved Domains (4) summary
    cd13275
    Location:1434 → 1546
    PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
    cl25732
    Location:1595 → 2007
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:380 → 883
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:683 → 1088
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_021259021.1 → XP_021114680.1  TRIO and F-actin-binding protein isoform X2

    Conserved Domains (3) summary
    cd13275
    Location:108 → 209
    PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
    pfam16214
    Location:270 → 453
    AC_N; Adenylyl cyclase N-terminal extracellular and transmembrane region
    cl25732
    Location:371 → 670
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_021259020.1 → XP_021114679.1  TRIO and F-actin-binding protein isoform X1

    Conserved Domains (3) summary
    cd13275
    Location:62 → 163
    PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
    pfam16214
    Location:224 → 407
    AC_N; Adenylyl cyclase N-terminal extracellular and transmembrane region
    cl25732
    Location:325 → 624
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_021259022.1 → XP_021114681.1  TRIO and F-actin-binding protein isoform X3

    Related
    ENSHGLP00000019740.1, ENSHGLT00000019938.1
    Conserved Domains (3) summary
    cd13275
    Location:27 → 128
    PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
    pfam16214
    Location:189 → 372
    AC_N; Adenylyl cyclase N-terminal extracellular and transmembrane region
    cl25732
    Location:290 → 589
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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