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bcan brevican [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101174621, updated on 8-Mar-2024

Summary

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Gene symbol
bcan
Gene description
brevican
See related
EnsemblRapid:ENSORLG00000015637
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 16
Exon count:
15
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 16 NC_019874.2 (26474140..26491804, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 16 NC_019874.1 (23758846..23776739, complement)

Chromosome 16 - NC_019874.2Genomic Context describing neighboring genes Neighboring gene Rh family B glycoprotein Neighboring gene hyaluronan and proteoglycan link protein 2 Neighboring gene uncharacterized LOC110013320 Neighboring gene uncharacterized LOC101175347

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brevican core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019874.2 Reference ASM223467v1 Primary Assembly

    Range
    26474140..26491804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004078467.4 → XP_004078515.1  brevican core protein

    UniProtKB/TrEMBL
    A0A3P9L418, H2MLJ4
    Related
    ENSORLP00000019573.2, ENSORLT00000019574.3
    Conserved Domains (8) summary
    pfam09528
    Location:414 → 885
    Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
    cd00033
    Location:1125 → 1182
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00410
    Location:42 → 159
    IG_like; Immunoglobulin like
    cd00054
    Location:959 → 992
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd03517
    Location:162 → 256
    Link_domain_CSPGs_modules_1_3; Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: ...
    cd03520
    Location:263 → 358
    Link_domain_CSPGs_modules_2_4; Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The ...
    cl02432
    Location:998 → 1121
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl11960
    Location:49 → 163
    Ig; Immunoglobulin domain
Nucleotide Protein
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