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trarg1a trafficking regulator of GLUT4 (SLC2A4) 1a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101173960, updated on 8-Mar-2024

Summary

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Gene symbol
trarg1a
Gene description
trafficking regulator of GLUT4 (SLC2A4) 1a
See related
EnsemblRapid:ENSORLG00000027719
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
tusc5; trarg1
Orthologs
human zebrafish all
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Genomic context

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See trarg1a in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 13 NC_019871.2 (17065522..17084076, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 13 NC_019871.1 (16501876..16520539, complement)

Chromosome 13 - NC_019871.2Genomic Context describing neighboring genes Neighboring gene carboxypeptidase D, a Neighboring gene golgi SNAP receptor complex member 1 Neighboring gene aryl hydrocarbon receptor interacting protein-like 1 Neighboring gene microRNA mir-22-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor suppressor candidate 5
Names
trafficking regulator of GLUT4 (SLC2A4) 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019871.2 Reference ASM223467v1 Primary Assembly

    Range
    17065522..17084076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011482612.3 → XP_011480914.1  tumor suppressor candidate 5

    UniProtKB/TrEMBL
    A0A3B3HAJ4, A0A3P9H040
    Related
    ENSORLP00000028856.1, ENSORLT00000027785.2
    Conserved Domains (1) summary
    pfam04505
    Location:99 → 173
    CD225; Interferon-induced transmembrane protein
Nucleotide Protein
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