U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

strbp spermatid perinuclear RNA binding protein [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101171016, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
strbp
Gene description
spermatid perinuclear RNA binding protein
See related
EnsemblRapid:ENSORLG00000010162
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 12
Exon count:
21
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 12 NC_019870.2 (15395599..15473117, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 12 NC_019870.1 (14864783..14945902, complement)

Chromosome 12 - NC_019870.2Genomic Context describing neighboring genes Neighboring gene ring finger and CCCH-type domains 2 Neighboring gene RAB GTPase activating protein 1 Neighboring gene probable G-protein coupled receptor 21 Neighboring gene SH2 domain containing 3Ca Neighboring gene ubiquitin related modifier 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
spermatid perinuclear RNA-binding protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019870.2 Reference ASM223467v1 Primary Assembly

    Range
    15395599..15473117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023961169.1 → XP_023816937.1  spermatid perinuclear RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A3B3HSP0, A0A3P9GZ12
    Related
    ENSORLP00000034186.1, ENSORLT00000036525.2
    Conserved Domains (2) summary
    smart00358
    Location:448 → 512
    DSRM; Double-stranded RNA binding motif
    cl02675
    Location:97 → 395
    DZF; DZF domain

  2. XM_023961168.1 → XP_023816936.1  spermatid perinuclear RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A3B3HSP0, A0A3P9GZ12
    Conserved Domains (2) summary
    smart00358
    Location:448 → 512
    DSRM; Double-stranded RNA binding motif
    cl02675
    Location:97 → 395
    DZF; DZF domain

  3. XM_023961170.1 → XP_023816938.1  spermatid perinuclear RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A3B3HD72, A0A3P9H007
    Related
    ENSORLP00000029218.1, ENSORLT00000047110.2
    Conserved Domains (2) summary
    smart00358
    Location:448 → 512
    DSRM; Double-stranded RNA binding motif
    cl02675
    Location:97 → 395
    DZF; DZF domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.