U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

celsr3 cadherin, EGF LAG seven-pass G-type receptor 3 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101169110, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
celsr3
Gene description
cadherin, EGF LAG seven-pass G-type receptor 3
See related
EnsemblRapid:ENSORLG00000023917
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See celsr3 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
37
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 7 NC_019865.2 (6619590..6723210)
102 previous assembly ASM31367v1 (GCF_000313675.1) 7 NC_019865.1 (6363642..6468535)

Chromosome 7 - NC_019865.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105354416 Neighboring gene microRNA mir-731 Neighboring gene DALR anticodon binding domain containing 3 Neighboring gene uncharacterized LOC110015301 Neighboring gene WD repeat domain 6

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cadherin EGF LAG seven-pass G-type receptor 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019865.2 Reference ASM223467v1 Primary Assembly

    Range
    6619590..6723210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020704490.2 → XP_020560149.1  cadherin EGF LAG seven-pass G-type receptor 3 isoform X3

    UniProtKB/TrEMBL
    A0A3P9MII4
    Related
    ENSORLP00000054718.1, ENSORLT00000104015.1
    Conserved Domains (10) summary
    smart00303
    Location:3095 → 3146
    GPS; G-protein-coupled receptor proteolytic site domain
    cd11304
    Location:1155 → 1252
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00008
    Location:2726 → 2787
    HormR; Domain present in hormone receptors
    smart00180
    Location:2677 → 2722
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00054
    Location:2035 → 2070
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00110
    Location:2115 → 2303
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:2329 → 2359
    EGF; EGF-like domain
    pfam16489
    Location:2806 → 3069
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
    cd14964
    Location:3158 → 3182
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:3155 → 3408
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

  2. XM_011476832.3 → XP_011475134.2  cadherin EGF LAG seven-pass G-type receptor 3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3IGY3, A0A3P9MII4
    Related
    ENSORLP00000042997.1, ENSORLT00000033748.2
    Conserved Domains (11) summary
    smart00303
    Location:3095 → 3146
    GPS; G-protein-coupled receptor proteolytic site domain
    cd11304
    Location:1155 → 1252
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00008
    Location:2726 → 2787
    HormR; Domain present in hormone receptors
    smart00180
    Location:2677 → 2722
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00054
    Location:2035 → 2070
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00110
    Location:2115 → 2303
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:2329 → 2359
    EGF; EGF-like domain
    pfam09606
    Location:3773 → 3971
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam16489
    Location:2806 → 3069
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
    cd15993
    Location:3158 → 3182
    7tmB2_CELSR3; TM helix 1 [structural motif]
    cl28897
    Location:3155 → 3408
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

  3. XM_020704489.2 → XP_020560148.2  cadherin EGF LAG seven-pass G-type receptor 3 isoform X2

    UniProtKB/TrEMBL
    A0A3B3H7K3, A0A3P9L9Z2
    Related
    ENSORLP00000027837.1, ENSORLT00000033098.2
    Conserved Domains (11) summary
    smart00303
    Location:3090 → 3141
    GPS; G-protein-coupled receptor proteolytic site domain
    cd11304
    Location:1155 → 1252
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00008
    Location:2721 → 2782
    HormR; Domain present in hormone receptors
    smart00180
    Location:2672 → 2717
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00054
    Location:2035 → 2070
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00110
    Location:2115 → 2298
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:2324 → 2354
    EGF; EGF-like domain
    pfam09606
    Location:3768 → 3966
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam16489
    Location:2801 → 3064
    GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
    cd15993
    Location:3153 → 3177
    7tmB2_CELSR3; TM helix 1 [structural motif]
    cl28897
    Location:3150 → 3403
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.