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nckap1 NCK-associated protein 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101168353, updated on 8-Mar-2024

Summary

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Gene symbol
nckap1
Gene description
NCK-associated protein 1
See related
EnsemblRapid:ENSORLG00000019526
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See nckap1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
33
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 15 NC_019873.2 (777442..830901, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) Unplaced Scaffold NW_004095189.1 (334398..388451)

Chromosome 15 - NC_019873.2Genomic Context describing neighboring genes Neighboring gene pyridoxal (pyridoxine, vitamin B6) kinase b Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3 Neighboring gene dual specificity protein phosphatase 19 Neighboring gene uncharacterized LOC101169346

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell projection assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cortical actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron projection morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCAR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nck-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019873.2 Reference ASM223467v1 Primary Assembly

    Range
    777442..830901 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011473276.3 → XP_011471578.1  nck-associated protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A3P9JC25, H2MZ32
    Related
    ENSORLP00000061631.1, ENSORLT00000103065.1
    Conserved Domains (1) summary
    pfam09735
    Location:13 → 1120
    Nckap1; Membrane-associated apoptosis protein

  2. XM_004086622.4 → XP_004086670.1  nck-associated protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3P9JC25, A0A3P9K9R3
    Related
    ENSORLP00000024309.3, ENSORLT00000024310.3
    Conserved Domains (1) summary
    pfam09735
    Location:13 → 1122
    Nckap1; Membrane-associated apoptosis protein

  3. XM_023963062.1 → XP_023818830.1  nck-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3P9JC25
    Conserved Domains (1) summary
    pfam09735
    Location:13 → 1126
    Nckap1; Membrane-associated apoptosis protein

  4. XM_023963061.1 → XP_023818829.1  nck-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9JC25
    Related
    ENSORLP00000059237.1, ENSORLT00000057247.1
    Conserved Domains (1) summary
    pfam09735
    Location:13 → 1128
    Nckap1; Membrane-associated apoptosis protein
Nucleotide Protein
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