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nckap1 NCK-associated protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 561894, updated on 22-Nov-2020

Summary

Official Symbol
nckap1provided by ZNC
Official Full Name
NCK-associated protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4426
See related
Ensembl:ENSDARG00000060853
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fd05c01; si:dkey-234n3.1
Orthologs

Genomic context

See nckap1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
31
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (44722205..44825419)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (44921239..45024467)
103 previous assembly Zv9 (GCF_000002035.4) 9 NC_007120.5 (45789588..45892802)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 1A, calmodulin-dependent Neighboring gene uncharacterized LOC103911689 Neighboring gene dual specificity phosphatase 19a Neighboring gene frizzled related protein Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 10

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
neuron projection morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cell projection IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
lamellipodium membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
nck-associated protein 1
Names
NAP 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001137665.1NP_001131137.1  nck-associated protein 1

    Status: PROVISIONAL

    Source sequence(s)
    BX548025, CR513785
    Related
    ENSDARP00000080611.6, ENSDART00000086176.7
    Conserved Domains (1) summary
    pfam09735
    Location:131118
    Nckap1; Membrane-associated apoptosis protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    44722205..44825419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167921.4XP_005167978.1  nck-associated protein 1 isoform X1

    Related
    ENSDARP00000156716.1, ENSDART00000190578.1
    Conserved Domains (1) summary
    pfam09735
    Location:131128
    Nckap1; Membrane-associated apoptosis protein
  2. XM_005167922.4XP_005167979.1  nck-associated protein 1 isoform X2

    Conserved Domains (1) summary
    pfam09735
    Location:131126
    Nckap1; Membrane-associated apoptosis protein
  3. XM_005167923.4XP_005167980.1  nck-associated protein 1 isoform X3

    See identical proteins and their annotated locations for XP_005167980.1

    UniProtKB/Swiss-Prot
    B0S6R1
    Related
    ENSDARP00000116328.1, ENSDART00000132696.2
    Conserved Domains (1) summary
    pfam09735
    Location:131122
    Nckap1; Membrane-associated apoptosis protein
  4. XM_005167924.4XP_005167981.1  nck-associated protein 1 isoform X4

    UniProtKB/Swiss-Prot
    B0S6R1
    Conserved Domains (1) summary
    pfam09735
    Location:131120
    Nckap1; Membrane-associated apoptosis protein
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