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hbp1 HMG-box transcription factor 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101166791, updated on 8-Mar-2024

Summary

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Gene symbol
hbp1
Gene description
HMG-box transcription factor 1
See related
EnsemblRapid:ENSORLG00000004396
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 6 NC_019864.2 (13979388..13989789)
102 previous assembly ASM31367v1 (GCF_000313675.1) 6 NC_019864.1 (8679887..8690288)

Chromosome 6 - NC_019864.2Genomic Context describing neighboring genes Neighboring gene heat shock protein 90, beta (grp94), member 1 Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta Neighboring gene probable G-protein coupled receptor 22 Neighboring gene B-cell receptor-associated protein 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HMG box-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019864.2 Reference ASM223467v1 Primary Assembly

    Range
    13979388..13989789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004069547.3 → XP_004069595.1  HMG box-containing protein 1

    See identical proteins and their annotated locations for XP_004069595.1

    UniProtKB/TrEMBL
    A0A3P9KWF7, H2LHP8, H2LHQ0
    Related
    ENSORLP00000005514.3, ENSORLT00000005515.3
    Conserved Domains (2) summary
    cd01388
    Location:370 → 441
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam08517
    Location:166 → 284
    AXH; Ataxin-1 and HBP1 module (AXH)

  2. XM_011475958.3 → XP_011474260.1  HMG box-containing protein 1

    See identical proteins and their annotated locations for XP_011474260.1

    UniProtKB/TrEMBL
    A0A3P9KWF7, H2LHP8, H2LHQ0
    Related
    ENSORLP00000005512.2, ENSORLT00000005513.3
    Conserved Domains (2) summary
    cd01388
    Location:370 → 441
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam08517
    Location:166 → 284
    AXH; Ataxin-1 and HBP1 module (AXH)
Nucleotide Protein
Heading Accession and Version

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