U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RBPJ recombination signal binding protein for immunoglobulin kappa J region [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101051066, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
RBPJ
Gene description
recombination signal binding protein for immunoglobulin kappa J region
See related
EnsemblRapid:ENSSBOG00000024531
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100920.1 (95685756..95807923, complement)

NW_024100920.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene cholecystokinin A receptor Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene zinc finger protein 248-like Neighboring gene small integral membrane protein 20

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024100920 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MAML1-RBP-Jkappa- ICN1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
recombining binding protein suppressor of hairless

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100920.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    95685756..95807923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010338174.2 → XP_010336476.1  recombining binding protein suppressor of hairless isoform X1

    See identical proteins and their annotated locations for XP_010336476.1

    UniProtKB/TrEMBL
    A0A2K6T7X1
    Conserved Domains (3) summary
    cd01176
    Location:350 → 446
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:179 → 328
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:48 → 177
    LAG1-DNAbind; LAG1, DNA binding

  2. XM_003927494.3 → XP_003927543.1  recombining binding protein suppressor of hairless isoform X2

    See identical proteins and their annotated locations for XP_003927543.1

    UniProtKB/TrEMBL
    A0A2K6T7X1, A0A2K6T7Y5
    Related
    ENSSBOP00000015759.1, ENSSBOT00000032562.2
    Conserved Domains (3) summary
    cd01176
    Location:337 → 433
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:166 → 315
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:35 → 160
    LAG1-DNAbind; LAG1, DNA binding

  3. XM_003927493.3 → XP_003927542.1  recombining binding protein suppressor of hairless isoform X3

    See identical proteins and their annotated locations for XP_003927542.1

    UniProtKB/TrEMBL
    A0A2K6T7X1, A0A2K6T7Y6
    Related
    ENSSBOP00000015756.1, ENSSBOT00000032558.2
    Conserved Domains (3) summary
    cd01176
    Location:336 → 432
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:192 → 314
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:34 → 159
    LAG1-DNAbind; LAG1, DNA binding
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.