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CDH22 cadherin 22 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100975054, updated on 6-Jun-2024

Summary

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Gene symbol
CDH22
Gene description
cadherin 22
See related
Ensembl:ENSPPAG00000034211
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 21 NC_073270.2 (51913754..52048497, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 20 NC_073269.1 (51906860..52041601, complement)

Chromosome 21 - NC_073270.2Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL13-like Neighboring gene CD40 molecule Neighboring gene solute carrier family 35 member C2 Neighboring gene uncharacterized LOC129394904 Neighboring gene engulfment and cell motility 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion mediated by cadherin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073270.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    51913754..52048497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034947216.3 → XP_034803107.1  cadherin-22 isoform X2

    UniProtKB/TrEMBL
    A0A2R9AXM1
    Conserved Domains (2) summary
    cd11304
    Location:402 → 521
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:569 → 736
    Cadherin_C; Cadherin cytoplasmic region

  2. XM_034947215.3 → XP_034803106.1  cadherin-22 isoform X1

    UniProtKB/TrEMBL
    A0A2R9AXM1
    Conserved Domains (2) summary
    cd11304
    Location:402 → 496
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:649 → 816
    Cadherin_C; Cadherin cytoplasmic region

  3. XM_063600884.1 → XP_063456954.1  cadherin-22 isoform X1

    UniProtKB/TrEMBL
    A0A2R9AXM1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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