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Ctsa cathepsin A [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100772055, updated on 8-Mar-2024

Summary

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Gene symbol
Ctsa
Gene description
cathepsin A
Locus tag
I79_006816
See related
Ensembl:ENSCGRG00015021541
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Ctsa in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613798.1 (2052850..2058810, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 6 NC_048599.1 (14586915..14592875, complement)

NW_003613798.1Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 9 Neighboring gene zinc finger protein 335 Neighboring gene phosphorylated CTD interacting factor 1 Neighboring gene phospholipid transfer protein Neighboring gene neuralized E3 ubiquitin protein ligase 2 Neighboring gene spermatogenesis associated 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosomal protective protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613798.1 Reference CriGri_1.0 Primary Assembly

    Range
    2052850..2058810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003500532.5 → XP_003500580.1  lysosomal protective protein

    See identical proteins and their annotated locations for XP_003500580.1

    UniProtKB/TrEMBL
    A0A8C2MCT4, G3H8V5
    Conserved Domains (1) summary
    pfam00450
    Location:52 → 489
    Peptidase_S10; Serine carboxypeptidase

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048599.1 Alternate CriGri-PICRH-1.0

    Range
    14586915..14592875 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027423439.2 → XP_027279240.1  lysosomal protective protein

    UniProtKB/TrEMBL
    A0A8C2MCT4, G3H8V5
    Related
    ENSCGRP00015028551.2, ENSCGRT00015034950.2
Nucleotide Protein Strain
Heading Accession and Version

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