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CriGri-PICRH-1.0

Organism name:
Cricetulus griseus (Chinese hamster)
Infraspecific name:
Strain: 17A/GY
Sex:
female
BioSample:
SAMN07140313
BioProject:
PRJNA389969
Submitter:
CHO Genome Community
Date:
2020/06/11
Release type:
minor
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_003668045.2 (latest)
RefSeq assembly accession:
GCF_003668045.3 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RAZU02
Assembly method:
SALSA v. OCT-2018
Expected final version:
yes
Reference guided assembly:
CriGri-PICR
Genome coverage:
31.0x
Sequencing technology:
Illumina HiSeq

IDs: 7269151 [UID] 20021778 [GenBank] 20140878 [RefSeq]

See Genome Information for Cricetulus griseus

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,366,634,374
Total ungapped length2,364,209,596
Gaps between scaffolds0
Number of scaffolds647
Scaffold N50274,391,693
Scaffold L504
Number of contigs4,014
Contig N502,711,962
Contig L50251
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)647

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003668145.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/an/a2
Chromosome 2CM023436.1=NC_048595.10
Chromosome 3CM023437.1=NC_048596.10
Chromosome 4CM023438.1=NC_048597.10
Chromosome 5CM023439.1=NC_048598.10
Chromosome 6CM023440.1=NC_048599.10
Chromosome 7CM023441.1=NC_048600.10
Chromosome 8CM023442.1=NC_048601.10
Chromosome 9CM023443.1=NC_048602.10
Chromosome 10CM023444.1=NC_048603.10
Chromosome XCM023445.1=NC_048604.10
unplacedn/an/an/a635

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,366,634,3746472,364,209,596274,391,6933,3670
Chromosome 1AllAssembled moleculeUnlocalized scaffolds550,089,8520550,089,852202549,812,4160549,812,416275,698,1590275,698,1594450445000
Chromosome 2Assembled molecule461,620,1171461,425,118461,620,1172730
Chromosome 3Assembled molecule282,827,5141282,690,514282,827,5141950
Chromosome 4Assembled molecule231,097,8681230,924,908231,097,8682140
Chromosome 5Assembled molecule193,770,0191193,523,966193,770,0193190
Chromosome 6Assembled molecule155,611,8701155,511,877155,611,8701410
Chromosome 7Assembled molecule134,359,0641134,248,121134,359,0641450
Chromosome 8Assembled molecule99,554,469199,473,84499,554,4691320
Chromosome 9Assembled molecule28,505,831128,402,71328,505,8311940
Chromosome 10Assembled molecule32,558,357132,547,04632,558,357190
Chromosome XAssembled molecule127,255,4341127,191,114127,255,434980
unplacedAssembled molecule69,383,97963568,457,959447,0131,1920
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