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RAB33B RAB33B, member RAS oncogene family [ Sus scrofa (pig) ]

Gene ID: 100626608, updated on 17-Aug-2024

Summary

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Official Symbol
RAB33Bprovided by VGNC
Official Full Name
RAB33B, member RAS oncogene familyprovided by VGNC
Primary source
VGNC:VGNC:98257
See related
Ensembl:ENSSSCG00000020711
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 6.7), subcutaneous adipose (RPKM 6.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (87545106..87570545, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (93091630..93115442)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100739463 Neighboring gene SET domain containing 7, histone lysine methyltransferase Neighboring gene uncharacterized LOC102162389 Neighboring gene N-alpha-acetyltransferase 15, NatA auxiliary subunit Neighboring gene NADH:ubiquinone oxidoreductase subunit C1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-33B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    87545106..87570545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005656532.3 → XP_005656589.1  ras-related protein Rab-33B

    See identical proteins and their annotated locations for XP_005656589.1

    UniProtKB/TrEMBL
    A0A4X1VH23, A0A5G2QRP8, A0A8D0IY62, A0A8D1U6R1, I3LK86
    Related
    ENSSSCP00000024500.1, ENSSSCT00000023933.2
    Conserved Domains (2) summary
    cd04115
    Location:32 → 201
    Rab33B_Rab33A; Rab GTPase family 33 includes Rab33A and Rab33B
    smart00175
    Location:34 → 200
    RAB; Rab subfamily of small GTPases

  2. XM_003357021.4 → XP_003357069.1  ras-related protein Rab-33B

    See identical proteins and their annotated locations for XP_003357069.1

    UniProtKB/TrEMBL
    A0A4X1VH23, A0A5G2QRP8, A0A8D0IY62, A0A8D1U6R1, I3LK86
    Conserved Domains (2) summary
    cd04115
    Location:32 → 201
    Rab33B_Rab33A; Rab GTPase family 33 includes Rab33A and Rab33B
    smart00175
    Location:34 → 200
    RAB; Rab subfamily of small GTPases
Nucleotide Protein
Heading Accession and Version

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