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TGIF2-RAB5IF TGIF2-RAB5IF readthrough [ Homo sapiens (human) ]

Gene ID: 100527943, updated on 23-Nov-2021

Summary

Official Symbol
TGIF2-RAB5IFprovided by HGNC
Official Full Name
TGIF2-RAB5IF readthroughprovided by HGNC
Primary source
HGNC:HGNC:44664
See related
Ensembl:ENSG00000259399
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TGIF2-C20orf24
Summary
This locus represents naturally occurring read-through transcription between the neighboring TGIF2 (TGFB-induced factor homeobox 2) and C20orf24 (chromosome 20 open reading frame 24) genes. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Dec 2010]
Expression
Ubiquitous expression in bone marrow (RPKM 59.6), esophagus (RPKM 49.3) and 25 other tissues See more
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Genomic context

See TGIF2-RAB5IF in Genome Data Viewer
Location:
20q11.23
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (36574515..36612557)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (35202918..35240960)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene DLG associated protein 4 Neighboring gene DLGAP4 antisense RNA 1 Neighboring gene myosin light chain 9 Neighboring gene uncharacterized LOC107985397 Neighboring gene TGFB induced factor homeobox 2 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene 2 Neighboring gene RAB5 interacting factor Neighboring gene Src like adaptor 2 Neighboring gene NDRG family member 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
TGIF2-C20orf24 protein
Names
TGIF2-C20orf24 readthrough

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199535.2NP_001186464.1  TGIF2-C20orf24 protein

    See identical proteins and their annotated locations for NP_001186464.1

    Status: VALIDATED

    Source sequence(s)
    AL050318
    UniProtKB/TrEMBL
    A0A0A6YYL0
    Related
    ENSP00000454021.1, ENST00000558530.1
    Conserved Domains (2) summary
    pfam05920
    Location:3664
    Homeobox_KN; Homeobox KN domain
    pfam07019
    Location:70146
    Rab5ip; Rab5-interacting protein (Rab5ip)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    36574515..36612557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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