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TGIF2 TGFB induced factor homeobox 2 [ Homo sapiens (human) ]

Gene ID: 60436, updated on 8-Jul-2021

Summary

Official Symbol
TGIF2provided by HGNC
Official Full Name
TGFB induced factor homeobox 2provided by HGNC
Primary source
HGNC:HGNC:15764
See related
Ensembl:ENSG00000118707 MIM:607294
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
The protein encoded by this gene is a DNA-binding homeobox protein and a transcriptional repressor, which appears to repress transcription by recruiting histone deacetylases to TGF beta-responsive genes. This gene is amplified and over-expressed in some ovarian cancers. Alternative splicing results in multiple transcript variants. A related pseudogene has been identified on chromosome 1. Read-through transcription also exists between this gene and the neighboring downstream C20orf24 (chromosome 20 open reading frame 24) gene. [provided by RefSeq, Dec 2010]
Expression
Ubiquitous expression in endometrium (RPKM 10.3), lymph node (RPKM 7.6) and 25 other tissues See more
Orthologs
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Genomic context

See TGIF2 in Genome Data Viewer
Location:
20q11.23
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (36573464..36593950)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (35201867..35222353)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene DLG associated protein 4 Neighboring gene DLGAP4 antisense RNA 1 Neighboring gene TGIF2-RAB5IF readthrough Neighboring gene myosin light chain 9 Neighboring gene uncharacterized LOC107985397 Neighboring gene RAB5 interacting factor Neighboring gene Src like adaptor 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in centrosome IDA
Inferred from Direct Assay
more info
 
located_in chromatin ISA
Inferred from Sequence Alignment
more info
 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm TAS
Traceable Author Statement
more info
 
located_in nucleus TAS
Traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
homeobox protein TGIF2
Names
5'-TG-3' interacting factor 2
TGF(beta)-induced transcription factor 2
TGFB-induced factor 2 (TALE family homeobox)
transcription growth factor-beta-induced factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199513.2NP_001186442.1  homeobox protein TGIF2

    See identical proteins and their annotated locations for NP_001186442.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All variants (1-4) encode the same protein.
    Source sequence(s)
    AL050318
    Consensus CDS
    CCDS13278.1
    UniProtKB/Swiss-Prot
    Q9GZN2
    Conserved Domains (1) summary
    pfam05920
    Location:3675
    Homeobox_KN; Homeobox KN domain
  2. NM_001199514.2NP_001186443.1  homeobox protein TGIF2

    See identical proteins and their annotated locations for NP_001186443.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. All variants (1-4) encode the same protein.
    Source sequence(s)
    AL050318
    Consensus CDS
    CCDS13278.1
    UniProtKB/Swiss-Prot
    Q9GZN2
    Related
    ENSP00000362981.2, ENST00000373874.6
    Conserved Domains (1) summary
    pfam05920
    Location:3675
    Homeobox_KN; Homeobox KN domain
  3. NM_001199515.2NP_001186444.1  homeobox protein TGIF2

    See identical proteins and their annotated locations for NP_001186444.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. All variants (1-4) encode the same protein.
    Source sequence(s)
    AL050318
    Consensus CDS
    CCDS13278.1
    UniProtKB/Swiss-Prot
    Q9GZN2
    Related
    ENSP00000481787.1, ENST00000611732.4
    Conserved Domains (1) summary
    pfam05920
    Location:3675
    Homeobox_KN; Homeobox KN domain
  4. NM_021809.7NP_068581.1  homeobox protein TGIF2

    See identical proteins and their annotated locations for NP_068581.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All variants (1-4) encode the same protein.
    Source sequence(s)
    AL050318
    Consensus CDS
    CCDS13278.1
    UniProtKB/Swiss-Prot
    Q9GZN2
    Related
    ENSP00000362979.3, ENST00000373872.9
    Conserved Domains (1) summary
    pfam05920
    Location:3675
    Homeobox_KN; Homeobox KN domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    36573464..36593950
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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