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ATP5MF-PTCD1 ATP5MF-PTCD1 readthrough [ Homo sapiens (human) ]

Gene ID: 100526740, updated on 5-Jan-2022

Summary

Official Symbol
ATP5MF-PTCD1provided by HGNC
Official Full Name
ATP5MF-PTCD1 readthroughprovided by HGNC
Primary source
HGNC:HGNC:38844
See related
Ensembl:ENSG00000248919
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ATP5J2-PTCD1
Summary
This locus represents naturally occurring read-through transcription between the ATP5J2 (ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2) and PTCD1 (pentatricopeptide repeat domain 1) genes on chromosome 7. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Nov 2010]
Expression
Ubiquitous expression in testis (RPKM 7.9), colon (RPKM 7.0) and 25 other tissues See more
Orthologs
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Genomic context

See ATP5MF-PTCD1 in Genome Data Viewer
Location:
7q22.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (99416739..99466167, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (99014362..99063790, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex subunit 1B Neighboring gene PDGFA associated protein 1 Neighboring gene microRNA 12119 Neighboring gene BUD31 homolog Neighboring gene pentatricopeptide repeat domain 1 Neighboring gene SAP domain containing ribonucleoprotein pseudogene Neighboring gene cleavage and polyadenylation specific factor 4 Neighboring gene ATP synthase membrane subunit f Neighboring gene tRNA-Trp (anticodon CCA) 5-1 Neighboring gene zinc finger protein 789 Neighboring gene zinc finger protein 394

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ56092

General protein information

Preferred Names
ATP5J2-PTCD1 fusion protein
Names
ATP5J2-PTCD1 read-through transcript
ATP5J2-PTCD1 readthrough

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001198879.2NP_001185808.1  ATP5J2-PTCD1 fusion protein

    Status: VALIDATED

    Source sequence(s)
    AC004922, AC073063, AK295912
    UniProtKB/TrEMBL
    B4DJ38, G3V325
    Related
    ENSP00000400168.1, ENST00000413834.5
    Conserved Domains (4) summary
    TIGR00756
    Location:225257
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:225251
    PPR; PPR repeat [structural motif]
    pfam10206
    Location:841
    WRW; Mitochondrial F1F0-ATP synthase, subunit f
    pfam13041
    Location:602645
    PPR_2; PPR repeat family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    99416739..99466167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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