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CYC1 cytochrome c1 [ Sus scrofa (pig) ]

Gene ID: 100525869, updated on 18-Sep-2024

Summary

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Official Symbol
CYC1provided by VGNC
Official Full Name
cytochrome c1provided by VGNC
Primary source
VGNC:VGNC:87126
See related
Ensembl:ENSSSCG00000031918
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in heart (RPKM 371.9), psoas major muscle (RPKM 229.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (606510..608991, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (759649..762119, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene MAF1 homolog, negative regulator of RNA polymerase III Neighboring gene SHANK associated RH domain interactor Neighboring gene glycosylphosphatidylinositol anchor attachment 1 Neighboring gene uncharacterized LOC102163278 Neighboring gene exosome component 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables electron transfer activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial electron transport, ubiquinol to cytochrome c IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome c1, heme protein, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    606510..608991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003125443.6 → XP_003125491.1  cytochrome c1, heme protein, mitochondrial

    UniProtKB/TrEMBL
    A0A287AZF9, A0A4X1UNI7, A0A8D0NC34
    Related
    ENSSSCP00000049531.1, ENSSSCT00000038242.1
    Conserved Domains (1) summary
    pfam02167
    Location:97 → 313
    Cytochrom_C1; Cytochrome C1 family
Nucleotide Protein
Heading Accession and Version

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