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Cyc1 cytochrome c-1 [ Mus musculus (house mouse) ]

Gene ID: 66445, updated on 31-Jan-2019

Summary

Official Symbol
Cyc1provided by MGI
Official Full Name
cytochrome c-1provided by MGI
Primary source
MGI:MGI:1913695
See related
Ensembl:ENSMUSG00000022551
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cyct1; AA408921; 2610002H19Rik
Expression
Ubiquitous expression in heart adult (RPKM 596.3), duodenum adult (RPKM 388.7) and 28 other tissues See more
Orthologs

Genomic context

See Cyc1 in Genome Data Viewer
Location:
15; 15 D3
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (76343523..76345934)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (76173953..76176364)

Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene GPI anchor attachment protein 1 Neighboring gene ribosomal protein S6, pseudogene 1 Neighboring gene SHANK-associated RH domain interacting protein Neighboring gene MAF1 homolog, negative regulator of RNA polymerase III

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
electron transfer activity IEA
Inferred from Electronic Annotation
more info
 
electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
heme binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
mitochondrial ATP synthesis coupled proton transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial electron transport, ubiquinol to cytochrome c IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
response to glucagon ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane HDA PubMed 
mitochondrial respiratory chain complex III IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion HDA PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 
respiratory chain IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cytochrome c1, heme protein, mitochondrial
Names
complex III subunit 4
complex III subunit IV
cytochrome b-c1 complex subunit 4
ubiquinol-cytochrome-c reductase complex cytochrome c1 subunit

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025567.3NP_079843.1  cytochrome c1, heme protein, mitochondrial

    See identical proteins and their annotated locations for NP_079843.1

    Status: VALIDATED

    Source sequence(s)
    AA738621, AK011288, AW121892
    Consensus CDS
    CCDS27567.1
    UniProtKB/Swiss-Prot
    Q9D0M3
    Related
    ENSMUSP00000023210.6, ENSMUST00000023210.7
    Conserved Domains (1) summary
    pfam02167
    Location:96314
    Cytochrom_C1; Cytochrome C1 family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

    Range
    76343523..76345934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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