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LOC100516085 zinc finger protein 256 [ Sus scrofa (pig) ]

Gene ID: 100516085, updated on 16-Nov-2023

Summary

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Gene symbol
LOC100516085
Gene description
zinc finger protein 256
See related
Ensembl:ENSSSCG00000036554
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
ZNF256
Expression
Broad expression in ovary (RPKM 2.4), lung (RPKM 1.0) and 8 other tissues See more
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Genomic context

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See LOC100516085 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (62569646..62586673)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (57166732..57180371)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene thymidylate synthase pseudogene Neighboring gene zinc finger protein 671 Neighboring gene zinc finger protein 850-like Neighboring gene zinc finger protein 256-like Neighboring gene zinc finger protein 256 Neighboring gene uncharacterized LOC102167727

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 256

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    62569646..62586673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013998882.2 → XP_013854336.1  zinc finger protein 256

    UniProtKB/TrEMBL
    A0A286ZMU3, A0A480QZY2, A0A8D1N3J1
    Related
    ENSSSCP00000032775.3, ENSSSCT00000058883.3
    Conserved Domains (5) summary
    smart00349
    Location:14 → 56
    KRAB; krueppel associated box
    COG5048
    Location:239 → 643
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:14 → 53
    KRAB; KRAB box
    pfam13465
    Location:366 → 391
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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