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RBM47 RNA binding motif protein 47 [ Sus scrofa (pig) ]

Gene ID: 100513606, updated on 8-Mar-2024

Summary

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Official Symbol
RBM47provided by VGNC
Official Full Name
RNA binding motif protein 47provided by VGNC
Primary source
VGNC:VGNC:92158
See related
Ensembl:ENSSSCG00000008796
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in kidney (RPKM 7.9), mixtures (RPKM 2.5) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (31508133..31690757, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (33174223..33190577, complement)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106504629 Neighboring gene cholinergic receptor nicotinic alpha 9 subunit Neighboring gene NOP2/Sun RNA methyltransferase family member 7 Neighboring gene 28S ribosomal protein S21, mitochondrial pseudogene Neighboring gene amyloid beta precursor protein binding family B member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    31508133..31690757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021101119.1 → XP_020956778.1  RNA-binding protein 47 isoform X1

    UniProtKB/TrEMBL
    A0A287AY12, A0A4X1UVY2, A0A8D1IFE4, A0A8D1Z5C0
    Conserved Domains (1) summary
    TIGR01648
    Location:116 → 686
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  2. XM_003128939.6 → XP_003128987.3  RNA-binding protein 47 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UY15, A0A8D1IGP6
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 591
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  3. XM_021101124.1 → XP_020956783.1  RNA-binding protein 47 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UY15, A0A8D1IGP6
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 591
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  4. XM_021101126.1 → XP_020956785.1  RNA-binding protein 47 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UY15, A0A8D1IGP6
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 591
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  5. XM_021101127.1 → XP_020956786.1  RNA-binding protein 47 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UY15, A0A8D1IGP6
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 591
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  6. XM_021101121.1 → XP_020956780.1  RNA-binding protein 47 isoform X3

    UniProtKB/TrEMBL
    A0A4X1V0Z2, A0A8D1Z5C0
    Conserved Domains (1) summary
    TIGR01648
    Location:113 → 683
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  7. XM_021101133.1 → XP_020956792.1  RNA-binding protein 47 isoform X7

    UniProtKB/TrEMBL
    A0A287AMM4, A0A8D1IGP6, A0A8D1Z090
    Related
    ENSSSCP00000045165.2, ENSSSCT00000049553.3
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 590
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  8. XM_021101125.1 → XP_020956784.1  RNA-binding protein 47 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UY15, A0A8D1IGP6
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 591
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  9. XM_021101123.1 → XP_020956782.1  RNA-binding protein 47 isoform X5

    UniProtKB/TrEMBL
    A0A286ZZW6, A0A4X1UVZ0, A0A8D1E198
    Related
    ENSSSCP00000037026.1, ENSSSCT00000053630.1
    Conserved Domains (1) summary
    TIGR01648
    Location:116 → 617
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  10. XM_021101120.1 → XP_020956779.1  RNA-binding protein 47 isoform X2

    UniProtKB/TrEMBL
    A0A8D1R2N6, A0A8D1Z5C0
    Conserved Domains (1) summary
    TIGR01648
    Location:116 → 685
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  11. XM_021101128.1 → XP_020956787.1  RNA-binding protein 47 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UY15, A0A8D1IGP6
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 591
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  12. XM_021101132.1 → XP_020956791.1  RNA-binding protein 47 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UY15, A0A8D1IGP6
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 591
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  13. XM_021101134.1 → XP_020956793.1  RNA-binding protein 47 isoform X8

    UniProtKB/TrEMBL
    A0A8D0I346
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 522
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  14. XM_005666610.3 → XP_005666667.1  RNA-binding protein 47 isoform X7

    UniProtKB/TrEMBL
    A0A287AMM4, A0A8D1IGP6, A0A8D1Z090
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 590
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  15. XM_021101130.1 → XP_020956789.1  RNA-binding protein 47 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UY15, A0A8D1IGP6
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 591
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  16. XM_021101122.1 → XP_020956781.1  RNA-binding protein 47 isoform X4

    UniProtKB/TrEMBL
    A0A8D1IGP6
    Conserved Domains (1) summary
    TIGR01648
    Location:85 → 655
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  17. XM_021101135.1 → XP_020956794.1  RNA-binding protein 47 isoform X8

    UniProtKB/TrEMBL
    A0A8D0I346
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 522
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  18. XM_021101129.1 → XP_020956788.1  RNA-binding protein 47 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UY15, A0A8D1IGP6
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 591
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  19. XM_021101131.1 → XP_020956790.1  RNA-binding protein 47 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UY15, A0A8D1IGP6
    Conserved Domains (1) summary
    TIGR01648
    Location:21 → 591
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
Nucleotide Protein
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