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Rbm47 RNA binding motif protein 47 [ Mus musculus (house mouse) ]

Gene ID: 245945, updated on 5-Jan-2023

Summary

Official Symbol
Rbm47provided by MGI
Official Full Name
RNA binding motif protein 47provided by MGI
Primary source
MGI:MGI:2384294
See related
Ensembl:ENSMUSG00000070780 AllianceGenome:MGI:2384294
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9530077J19Rik
Summary
Enables RNA binding activity. Acts upstream of or within cytidine to uridine editing and hematopoietic progenitor cell differentiation. Located in nucleus. Is expressed in several structures, including alimentary system; brain ventricle and choroid plexus; genitourinary system; nasal cavity epithelium; and yolk sac. Orthologous to human RBM47 (RNA binding motif protein 47). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in colon adult (RPKM 32.7), small intestine adult (RPKM 29.4) and 16 other tissues See more
Orthologs
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Genomic context

See Rbm47 in Genome Data Viewer
Location:
5; 5 C3.1
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (66173892..66309297, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (66016549..66151954, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9130230L23 gene Neighboring gene predicted gene, 40310 Neighboring gene RIKEN cDNA 1700126H18 gene Neighboring gene predicted gene, 26725 Neighboring gene predicted gene, 22929 Neighboring gene predicted gene, 54288

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC18900

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables RNA binding ISO
Inferred from Sequence Orthology
more info
 
enables enzyme binding ISO
Inferred from Sequence Orthology
more info
 
enables enzyme-substrate adaptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables enzyme-substrate adaptor activity ISO
Inferred from Sequence Orthology
more info
 
enables mRNA 3'-UTR binding IDA
Inferred from Direct Assay
more info
PubMed 
enables mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
part_of apolipoprotein B mRNA editing enzyme complex ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127382.2NP_001120854.1  RNA-binding protein 47 isoform a

    See identical proteins and their annotated locations for NP_001120854.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 3 all encode the same isoform (a).
    Source sequence(s)
    AK049280, AK085733, AK152971, BY315501, BY380934, CJ210661, CJ229698
    Consensus CDS
    CCDS19313.1
    UniProtKB/Swiss-Prot
    Q8BZE8, Q91WT8
    Related
    ENSMUSP00000128016.2, ENSMUST00000167950.8
    Conserved Domains (1) summary
    TIGR01648
    Location:11590
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  2. NM_001291226.1NP_001278155.1  RNA-binding protein 47 isoform b

    See identical proteins and their annotated locations for NP_001278155.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (b) that is shorter than isoform a.
    Source sequence(s)
    AC132284, AK049280, AK085733, AK089362, AK152971, BY380934, CJ210661, CJ229698
    Consensus CDS
    CCDS71598.1
    UniProtKB/Swiss-Prot
    Q91WT8
    UniProtKB/TrEMBL
    D3YXZ5
    Related
    ENSMUSP00000092348.6, ENSMUST00000094756.11
    Conserved Domains (1) summary
    TIGR01648
    Location:11521
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  3. NM_139065.3NP_620704.1  RNA-binding protein 47 isoform a

    See identical proteins and their annotated locations for NP_620704.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 3 all encode the same isoform (a).
    Source sequence(s)
    AC132284, AK049280, AK085733, AK152971, BY380934, CJ210661, CJ229698
    Consensus CDS
    CCDS19313.1
    UniProtKB/Swiss-Prot
    Q8BZE8, Q91WT8
    Related
    ENSMUSP00000109355.2, ENSMUST00000113726.8
    Conserved Domains (1) summary
    TIGR01648
    Location:11590
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  4. NM_178446.4NP_848541.2  RNA-binding protein 47 isoform a

    See identical proteins and their annotated locations for NP_848541.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1, 2 and 3 all encode isoform a.
    Source sequence(s)
    AC132284, AK049280, AK085733, AK152971, BY380934, CJ210661, CJ229698
    Consensus CDS
    CCDS19313.1
    UniProtKB/Swiss-Prot
    Q8BZE8, Q91WT8
    Related
    ENSMUSP00000144325.2, ENSMUST00000200775.4
    Conserved Domains (1) summary
    TIGR01648
    Location:11590
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    66173892..66309297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030254507.1XP_030110367.1  RNA-binding protein 47 isoform X1

    UniProtKB/Swiss-Prot
    Q8BZE8
    Conserved Domains (1) summary
    TIGR01648
    Location:11590
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  2. XM_006503962.1XP_006504025.1  RNA-binding protein 47 isoform X2

    See identical proteins and their annotated locations for XP_006504025.1

    UniProtKB/TrEMBL
    D3YXZ5
    Conserved Domains (1) summary
    TIGR01648
    Location:11521
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  3. XM_006503956.2XP_006504019.1  RNA-binding protein 47 isoform X1

    See identical proteins and their annotated locations for XP_006504019.1

    UniProtKB/Swiss-Prot
    Q8BZE8, Q91WT8
    Related
    ENSMUSP00000092349.3, ENSMUST00000094757.9
    Conserved Domains (1) summary
    TIGR01648
    Location:11590
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family