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RBM47 RNA binding motif protein 47 [ Homo sapiens (human) ]

Gene ID: 54502, updated on 7-Oct-2019

Summary

Official Symbol
RBM47provided by HGNC
Official Full Name
RNA binding motif protein 47provided by HGNC
Primary source
HGNC:HGNC:30358
See related
Ensembl:ENSG00000163694
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NET18
Expression
Broad expression in colon (RPKM 20.7), kidney (RPKM 20.0) and 22 other tissues See more
Orthologs

Genomic context

See RBM47 in Genome Data Viewer
Location:
4p14
Exon count:
16
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (40423270..40630911, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (40425272..40632958, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene RNA, U7 small nuclear 74 pseudogene Neighboring gene HNF1 motif-containing MPRA enhancer 253 Neighboring gene ribosomal protein L37 pseudogene 14 Neighboring gene microRNA 4802 Neighboring gene uncharacterized LOC107986225 Neighboring gene NOP2/Sun RNA methyltransferase family member 7 Neighboring gene ADP ribosylation factor like GTPase 4A pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association studies and heritability estimates of body mass index related phenotypes in bangladeshi adults.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ20273, FLJ21344, FLJ21643, DKFZp686F02235

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 
hematopoietic progenitor cell differentiation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098634.2NP_001092104.1  RNA-binding protein 47 isoform a

    See identical proteins and their annotated locations for NP_001092104.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
    Source sequence(s)
    AC098869, AC112717
    Consensus CDS
    CCDS43223.1
    UniProtKB/Swiss-Prot
    A0AV96
    Related
    ENSP00000295971.7, ENST00000295971.12
    Conserved Domains (1) summary
    TIGR01648
    Location:21593
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  2. NM_001371113.1NP_001358042.1  RNA-binding protein 47 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC098869
    Related
    ENSP00000371212.2, ENST00000381793.6
  3. NM_001371114.1NP_001358043.1  RNA-binding protein 47 isoform c

    Status: VALIDATED

    Source sequence(s)
    AC098869, AC112717
    Related
    ENSP00000423243.1, ENST00000514014.1
  4. NM_019027.4NP_061900.2  RNA-binding protein 47 isoform b

    See identical proteins and their annotated locations for NP_061900.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the mid-coding region, compared to variant 1, resulting in a shorter protein (isoform b), compared to isoform a.
    Source sequence(s)
    AC098869, AK000280, AK025296, BM837005, BP332501, CB124502
    Consensus CDS
    CCDS3460.1
    UniProtKB/Swiss-Prot
    A0AV96
    Related
    ENSP00000371214.6, ENST00000381795.10
    Conserved Domains (4) summary
    cd12485
    Location:70147
    RRM1_RBM47; RNA recognition motif 1 found in vertebrate RNA-binding protein 47 (RBM47)
    cd12491
    Location:150238
    RRM2_RBM47; RNA recognition motif 2 in vertebrate RNA-binding protein 47 (RBM47)
    cd12497
    Location:245318
    RRM3_RBM47; RNA recognition motif 3 in vertebrate RNA-binding protein 47 (RBM47)
    TIGR01648
    Location:21524
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    40423270..40630911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005248103.4XP_005248160.1  RNA-binding protein 47 isoform X1

    See identical proteins and their annotated locations for XP_005248160.1

    UniProtKB/Swiss-Prot
    A0AV96
    Conserved Domains (1) summary
    TIGR01648
    Location:21593
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  2. XM_017008307.1XP_016863796.1  RNA-binding protein 47 isoform X1

    UniProtKB/Swiss-Prot
    A0AV96
    Conserved Domains (1) summary
    TIGR01648
    Location:21593
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  3. XM_017008310.2XP_016863799.1  RNA-binding protein 47 isoform X3

    UniProtKB/Swiss-Prot
    A0AV96
    Conserved Domains (4) summary
    cd12485
    Location:70147
    RRM1_RBM47; RNA recognition motif 1 found in vertebrate RNA-binding protein 47 (RBM47)
    cd12491
    Location:150238
    RRM2_RBM47; RNA recognition motif 2 in vertebrate RNA-binding protein 47 (RBM47)
    cd12497
    Location:245318
    RRM3_RBM47; RNA recognition motif 3 in vertebrate RNA-binding protein 47 (RBM47)
    TIGR01648
    Location:21524
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  4. XM_017008309.2XP_016863798.1  RNA-binding protein 47 isoform X2

    Conserved Domains (4) summary
    cd12485
    Location:70147
    RRM1_RBM47; RNA recognition motif 1 found in vertebrate RNA-binding protein 47 (RBM47)
    cd12491
    Location:150238
    RRM2_RBM47; RNA recognition motif 2 in vertebrate RNA-binding protein 47 (RBM47)
    cd12497
    Location:245318
    RRM3_RBM47; RNA recognition motif 3 in vertebrate RNA-binding protein 47 (RBM47)
    TIGR01648
    Location:21592
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  5. XM_011513707.2XP_011512009.1  RNA-binding protein 47 isoform X1

    See identical proteins and their annotated locations for XP_011512009.1

    UniProtKB/Swiss-Prot
    A0AV96
    Conserved Domains (1) summary
    TIGR01648
    Location:21593
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  6. XM_011513708.2XP_011512010.1  RNA-binding protein 47 isoform X1

    See identical proteins and their annotated locations for XP_011512010.1

    UniProtKB/Swiss-Prot
    A0AV96
    Conserved Domains (1) summary
    TIGR01648
    Location:21593
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  7. XM_017008308.1XP_016863797.1  RNA-binding protein 47 isoform X1

    UniProtKB/Swiss-Prot
    A0AV96
    Conserved Domains (1) summary
    TIGR01648
    Location:21593
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  8. XM_017008306.2XP_016863795.1  RNA-binding protein 47 isoform X1

    UniProtKB/Swiss-Prot
    A0AV96
    Conserved Domains (1) summary
    TIGR01648
    Location:21593
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  9. XM_024454098.1XP_024309866.1  RNA-binding protein 47 isoform X1

    Conserved Domains (1) summary
    TIGR01648
    Location:21593
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  10. XM_017008304.2XP_016863793.1  RNA-binding protein 47 isoform X1

    UniProtKB/Swiss-Prot
    A0AV96
    Conserved Domains (1) summary
    TIGR01648
    Location:21593
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  11. XM_005248108.4XP_005248165.1  RNA-binding protein 47 isoform X1

    See identical proteins and their annotated locations for XP_005248165.1

    UniProtKB/Swiss-Prot
    A0AV96
    Conserved Domains (1) summary
    TIGR01648
    Location:21593
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
  12. XM_005248109.4XP_005248166.1  RNA-binding protein 47 isoform X1

    See identical proteins and their annotated locations for XP_005248166.1

    UniProtKB/Swiss-Prot
    A0AV96
    Conserved Domains (1) summary
    TIGR01648
    Location:21593
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
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