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KRBOX1 KRAB box domain containing 1 [ Homo sapiens (human) ]

Gene ID: 100506243, updated on 25-Jan-2022

Summary

Official Symbol
KRBOX1provided by HGNC
Official Full Name
KRAB box domain containing 1provided by HGNC
Primary source
HGNC:HGNC:38708
See related
Ensembl:ENSG00000240747 AllianceGenome:HGNC:38708
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be involved in regulation of transcription, DNA-templated. [provided by Alliance of Genome Resources, Nov 2021]
Annotation information
Note: This gene LOC26172 (GeneID: 26172) was previously annotated as C3orf41, and a chimeric/readthrough mRNA that contained part of the neighboring gene (GeneID: 729085) as well as LOC26172 was associated with this GeneID. The two genes are now represented by separate entries, LOC26172 (GeneID: 26172) and C3orf41 (GeneID: 729085). [13 Feb 2013]
Expression
Biased expression in testis (RPKM 80.1) and endometrium (RPKM 3.4) See more
Orthologs
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Genomic context

See KRBOX1 in Genome Data Viewer
Location:
3p22.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (42936386..42942792)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (42977878..42984284)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 22 Neighboring gene zinc finger protein 662 Neighboring gene KRBOX1 antisense RNA 1 Neighboring gene golgi associated kinase 1A Neighboring gene uncharacterized LOC107986079 Neighboring gene protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • FLJ27464, FLJ51974, MGC141710

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
KRAB domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205272.2NP_001192201.1  KRAB domain-containing protein 1

    See identical proteins and their annotated locations for NP_001192201.1

    Status: VALIDATED

    Source sequence(s)
    BC062786
    Consensus CDS
    CCDS54572.1
    UniProtKB/Swiss-Prot
    C9JBD0
    UniProtKB/TrEMBL
    A0A024R2N1
    Related
    ENSP00000373254.5, ENST00000383748.9
    Conserved Domains (2) summary
    smart00349
    Location:1574
    KRAB; krueppel associated box
    pfam01352
    Location:1554
    KRAB; KRAB box

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    42936386..42942792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_015673.1: Suppressed sequence

    Description
    NM_015673.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
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