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pde7a phosphodiesterase 7A [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100498541, updated on 17-Aug-2024

Summary

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Official Symbol
pde7aprovided by Xenbase
Official Full Name
phosphodiesterase 7Aprovided by Xenbase
Primary source
Xenbase:XB-GENE-1013813
See related
Ensembl:ENSXETG00000020283
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See pde7a in Genome Data Viewer
Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (118545151..118604996, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (103662626..103727656, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing 1 Neighboring gene mitochondrial fission regulator 1 Neighboring gene uncharacterized LOC116411680 Neighboring gene DnaJ heat shock protein family (Hsp40) member C5 beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    118545151..118604996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002940558.5 → XP_002940604.1  high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A isoform X4

    UniProtKB/TrEMBL
    A0A6I8Q7U0, A0A8J0QX24
    Conserved Domains (1) summary
    pfam00233
    Location:211 → 431
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  2. XM_031904404.1 → XP_031760264.1  high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A isoform X2

    UniProtKB/TrEMBL
    A0A6I8Q7U0, F7BCQ1
    Related
    ENSXETP00000043752.5, ENSXETT00000043752.5
    Conserved Domains (1) summary
    pfam00233
    Location:222 → 455
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  3. XM_012965274.3 → XP_012820728.1  high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A isoform X3

    UniProtKB/TrEMBL
    A0A6I8Q7U0, A0A6I8S179
    Related
    ENSXETP00000088671.2, ENSXETT00000095537.2
    Conserved Domains (1) summary
    pfam00233
    Location:215 → 435
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  4. XM_031904402.1 → XP_031760262.1  high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q7U0, A0A8J1JQU6
    Conserved Domains (1) summary
    pfam00233
    Location:226 → 459
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  5. XM_031904405.1 → XP_031760265.1  high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A isoform X5

    UniProtKB/TrEMBL
    A0A6I8Q7U0, A0A8J1JTA6
    Conserved Domains (1) summary
    pfam00233
    Location:196 → 429
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  6. XM_018095128.2 → XP_017950617.1  high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A isoform X6

    UniProtKB/TrEMBL
    A0A6I8Q7U0, A0A6I8SHM8
    Related
    ENSXETP00000091856.2, ENSXETT00000069787.2
    Conserved Domains (1) summary
    pfam00233
    Location:185 → 405
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  7. XM_031904406.1 → XP_031760266.1  high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A isoform X7

    UniProtKB/TrEMBL
    A0A8J1JUI6
    Conserved Domains (1) summary
    pfam00233
    Location:134 → 354
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein Strain
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