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lsm11 LSM11, U7 small nuclear RNA associated [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100492392, updated on 17-Aug-2024

Summary

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Official Symbol
lsm11provided by Xenbase
Official Full Name
LSM11, U7 small nuclear RNA associatedprovided by Xenbase
Primary source
Xenbase:XB-GENE-1007644
See related
Ensembl:ENSXETG00000037324
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See lsm11 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (13993691..13997653, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (6592310..6594486)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene EBF family member 4 Neighboring gene clathrin interactor 1 Neighboring gene ADAM metallopeptidase domain 19 Neighboring gene NIPA-like domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables U7 snRNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
U7 snRNA-associated Sm-like protein LSm11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    13993691..13997653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031898681.1 → XP_031754541.1  U7 snRNA-associated Sm-like protein LSm11 isoform X2

    UniProtKB/TrEMBL
    A0A8J1JD45
    Conserved Domains (1) summary
    cd01739
    Location:147 → 185
    LSm11_M; Like-Sm protein 11, middle domain

  2. XM_031898680.1 → XP_031754540.1  U7 snRNA-associated Sm-like protein LSm11 isoform X1

    UniProtKB/TrEMBL
    A0A6I8PWH2
    Related
    ENSXETP00000064806.2, ENSXETT00000070834.2
    Conserved Domains (1) summary
    cd01739
    Location:147 → 212
    LSm11_M; Like-Sm protein 11, middle domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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