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LOC100446260 tubulin alpha-1C chain [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100446260, updated on 6-Jun-2024

Summary

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Gene symbol
LOC100446260
Gene description
tubulin alpha-1C chain
Locus tag
CR201_G0039508
See related
Ensembl:ENSPPYG00000004482
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as
TUBA1C
Orthologs
human mouse all
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Genomic context

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See LOC100446260 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 10 NC_071995.2 (46980543..47037763)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 12 NC_071997.1 (46993252..47039866)

Chromosome 10 - NC_071995.2Genomic Context describing neighboring genes Neighboring gene tubulin alpha 1b Neighboring gene tubulin alpha 1a Neighboring gene peripherin Neighboring gene trophinin associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubulin alpha-1C chain
Names
tubulin, alpha 1c

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071995.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    46980543..47037763
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054527209.2 → XP_054383184.2  tubulin alpha-1C chain isoform X1

    UniProtKB/TrEMBL
    A0A2J8R7L3, H2PUF1

  2. XM_009247680.4 → XP_009245955.1  tubulin alpha-1C chain isoform X2

    See identical proteins and their annotated locations for XP_009245955.1

    UniProtKB/TrEMBL
    A0A2J8R7L3, A0A2J8SYL9, A0A6D2W4K5, H2NH68, H2PUF1
    Related
    ENSPPYP00000005116.1
    Conserved Domains (1) summary
    PTZ00335
    Location:1 → 448
    PTZ00335; tubulin alpha chain; Provisional
Nucleotide Protein
Heading Accession and Version

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