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LGI1 leucine rich glioma inactivated 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100415038, updated on 8-Mar-2024

Summary

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Gene symbol
LGI1
Gene description
leucine rich glioma inactivated 1
See related
Ensembl:ENSCJAG00000015588
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 12 NC_071453.1 (83148024..83185797)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 12 NC_048394.1 (83871105..83908884)

Chromosome 12 - NC_071453.1Genomic Context describing neighboring genes Neighboring gene retinol binding protein 4 Neighboring gene fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 Neighboring gene uncharacterized LOC103796758 Neighboring gene ras-related protein Rab-11A-like Neighboring gene solute carrier family 35 member G1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate. Datson NA, et al. BMC Genomics, 2007 Jun 25. PMID 17592630, Free PMC Article
  2. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich glioma-inactivated protein 1
Names
leucine-rich glioma inactivated protein 1 precursor-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071453.1 Reference mCalJa1.2.pat.X

    Range
    83148024..83185797
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017979143.3 → XP_017834632.1  leucine-rich glioma-inactivated protein 1 isoform X2

    UniProtKB/TrEMBL
    F7A305, F7A3V0

  2. XM_002756447.5 → XP_002756493.1  leucine-rich glioma-inactivated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2R8MNW8, F7A3V0
    Related
    ENSCJAP00000028780.1
    Conserved Domains (5) summary
    smart00082
    Location:258 → 306
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:154 → 177
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:402 → 448
    EPTP; EPTP domain
    pfam12799
    Location:200 → 240
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:176 → 236
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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