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CD93 CD93 molecule [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100401234, updated on 8-Mar-2024

Summary

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Gene symbol
CD93
Gene description
CD93 molecule
See related
Ensembl:ENSCJAG00000005796
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See CD93 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (28026514..28034299, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (28021678..28029460, complement)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene somatostatin receptor 4 Neighboring gene thrombomodulin Neighboring gene uncharacterized LOC103792877 Neighboring gene uncharacterized LOC108591664

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
complement component C1q receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    28026514..28034299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008995835.4 → XP_008994083.1  complement component C1q receptor isoform X2

    UniProtKB/TrEMBL
    F7HWQ1
    Conserved Domains (6) summary
    cd03600
    Location:33 → 186
    CLECT_thrombomodulin_like; C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR
    smart00179
    Location:347 → 376
    EGF_CA; Calcium-binding EGF-like domain
    pfam07645
    Location:429 → 469
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:328 → 350
    cEGF; Complement Clr-like EGF-like
    pfam14670
    Location:266 → 302
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:382 → 421
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_008995834.4 → XP_008994082.1  complement component C1q receptor isoform X1

    UniProtKB/TrEMBL
    A0A8I3WL84, F7HWQ1
    Related
    ENSCJAP00000010640.1
    Conserved Domains (6) summary
    cd03600
    Location:33 → 186
    CLECT_thrombomodulin_like; C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR
    smart00179
    Location:347 → 376
    EGF_CA; Calcium-binding EGF-like domain
    pfam07645
    Location:429 → 469
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:328 → 350
    cEGF; Complement Clr-like EGF-like
    pfam14670
    Location:266 → 302
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:382 → 421
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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