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SOD1 superoxide dismutase 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100391925, updated on 8-Mar-2024

Summary

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Gene symbol
SOD1
Gene description
superoxide dismutase 1
See related
Ensembl:ENSCJAG00000008983
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 21 NC_071462.1 (36050476..36059718)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 21 NC_048403.1 (36680526..36690001)

Chromosome 21 - NC_071462.1Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene chromatin modification-related protein MEAF6-like Neighboring gene small nucleolar RNA SNORA81 Neighboring gene SR-related CTD associated factor 4 Neighboring gene hormonally up-regulated Neu-associated kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure, molecular evolution, and gene expression of primate superoxide dismutases. Fukuhara R, et al. Gene, 2002 Aug 21. PMID 12383507
  2. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in removal of superoxide radicals IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
superoxide dismutase [Cu-Zn]
Names
Cu,Zn-superoxide dismutase
superoxide dismutase 1, soluble

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071462.1 Reference mCalJa1.2.pat.X

    Range
    36050476..36059718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002761360.6 → XP_002761406.1  superoxide dismutase [Cu-Zn]

    UniProtKB/Swiss-Prot
    Q8HXP8
    Related
    ENSCJAP00000016448.2
    Conserved Domains (1) summary
    cd00305
    Location:3 → 147
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8HXP8.3 GenPept UniProtKB/Swiss-Prot:Q8HXP8

Gene LinkOut

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